Pairwise Alignments

Query, 464 a.a., DNA repair protein RadA from Variovorax sp. SCN45

Subject, 456 a.a., DNA repair enzyme from Pseudomonas putida KT2440

 Score =  528 bits (1359), Expect = e-154
 Identities = 272/462 (58%), Positives = 345/462 (74%), Gaps = 10/462 (2%)

Query: 1   MAKDKTTFVCSECGGTSPKWLGKCPSCGAWNTLIEQAAGAAGGG-PANNRFGTQFASLAG 59
           MAK K  + C+ECG T PKW G+C  CGAWNTL+E    + G   P++ R G        
Sbjct: 1   MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWT----GQ 56

Query: 60  ASELATLSEIEATDVARTPTGLDELDRVLGGGIVSGGVTLIGGDPGIGKSTLLLQAVDAL 119
            +++ TL+E+   ++ R  T   ELDRVLGGG+V G V LIGGDPGIGKST+LLQ +  +
Sbjct: 57  QAQIKTLAEVSVEEIPRFTTSSTELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNI 116

Query: 120 QRAGQNALYVTGEESGSQVALRSKRLGLDHSQVQVLAEIQLEKIIATLDATRPAIAVIDS 179
              G  ALYVTGEES  QVA+RS+RLGL   Q++V+ E  +E IIAT    +P + VIDS
Sbjct: 117 A-VGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIATARVEKPRVMVIDS 175

Query: 180 IQTVYSDQLTSAPGSVAQVRECAAHLTRFAKTSGTAVVLVGHVTKEGALAGPRVLEHMVD 239
           IQT++++QL SAPG VAQVRE  A L R+AK SGTA+ LVGHVTKEG+LAGPRVLEHMVD
Sbjct: 176 IQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVD 235

Query: 240 TVLYFEGDTHSSFRLVRAIKNRFGAVNEIGVFAMTERGLKGVTNPSAIFLSQHAEPVPGS 299
           TVLYFEG++    RL+RA+KNRFGAVNE+GVF MT+RGLK V+NPSAIFL++  E VPGS
Sbjct: 236 TVLYFEGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGS 295

Query: 300 VVLVTLEGTRPMLVEIQALVDNGG-PSPRRLSVGLDRDRLAMLLAVLHRHAGVACMDQDV 358
           VV+ T EGTRPMLVE+QALVD+    +PRR+++GLD++RLAMLLAVLHRH G+   DQDV
Sbjct: 296 VVMATWEGTRPMLVEVQALVDDSHLANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDV 355

Query: 359 FVNAVGGVRISEPAADLAVMLAITSSLRGKPMPKGFIAFGEVGLAGEVRPAPRGQERLRE 418
           F+N VGGV++ E A+DLA++ A+ SSLR +P+  G + FGE+GL+GEVRP P GQERL+E
Sbjct: 356 FLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSGEVRPVPSGQERLKE 415

Query: 419 AAKLGFSVAVVPKANAPRKGTKEIEGLTIHAVDRIEEAMDVV 460
           AAK GF  A+VPK NAP++      GL + AV R+E+A+D +
Sbjct: 416 AAKHGFKRAIVPKGNAPKEAP---AGLQVIAVTRLEQALDAL 454