Pairwise Alignments

Query, 355 a.a., ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 435 a.a., High-affinity branched-chain amino acid transport system permease protein BraE from Pseudomonas putida KT2440

 Score =  117 bits (294), Expect = 4e-31
 Identities = 93/346 (26%), Positives = 161/346 (46%), Gaps = 39/346 (11%)

Query: 13  RSRLLALLLVVLFLALAFAPFIFPGVKALSVAAKILVFVVLVASFDLLLGYTGIVSFAHT 72
           +SRL  ++  ++ +A+ F   IF     L+V    L++V+L    ++++G  G++   + 
Sbjct: 102 KSRLRYIIPALIVIAIVFP--IFANKYLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYV 159

Query: 73  MFFGIGAYGIAISASRLGPNWGAVL--VGLGASLAISLVLSFAIGLFSLRVRAIFFAMIT 130
            F+ IGAYG+A+    LG  + +VL    + A+LA   +L F +    LR+   + A++T
Sbjct: 160 AFYAIGAYGLALGYQYLGLGFWSVLPLAAIAAALA-GCILGFPV----LRMHGDYLAIVT 214

Query: 131 LAVASAFQTLASQLSDFTGGEDGLTFKLPELISPSFEFSEEP-------FLGVSLDGRL- 182
           L      + + +    FTGG +G+    P      F    +        F G   +  L 
Sbjct: 215 LGFGEIIRLVLNNWLSFTGGPNGMPAPSPTFFGLEFGRRAKDGGVPIHEFFGFEYNASLK 274

Query: 183 --LCYYLLFVAAVVLVLALLRIVNSPFGRVLQAIRENEFRAEAIGYRVVVYRTTAAVLSA 240
               Y +LF+  + ++    R+   P GR  +A+RE+E    ++G   V+ + +A  L A
Sbjct: 275 FVFIYAVLFMVVLAVLYIKHRLTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTLGA 334

Query: 241 LFATLAGAMLAIWLRYNGPDTSLSFEIMIDVLLIVVIGGMGTIYGAAIGAVLFVIAQSYL 300
             A LAG   A +  +  P +   FE  + +L IVV+GGMG+  G  I A +  +A    
Sbjct: 335 STAGLAGVFFATYQGFVNPSSFTFFESAL-ILAIVVLGGMGSTVGVVIAAFVLTVA---- 389

Query: 301 QDLLRIGNEAASGLPWLAALLSPDRWLLWLGVLFVLSVYYFPTGIV 346
            +LLR  +E                 +L  GVL VL + + P G++
Sbjct: 390 PELLRSFSEYR---------------VLLFGVLMVLMMIWRPRGLI 420