Pairwise Alignments

Query, 267 a.a., Exodeoxyribonuclease III (EC 3.1.11.2) from Variovorax sp. SCN45

Subject, 270 a.a., exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI from Pseudomonas putida KT2440

 Score =  111 bits (277), Expect = 2e-29
 Identities = 90/279 (32%), Positives = 140/279 (50%), Gaps = 31/279 (11%)

Query: 3   KLTSLNLNGLRSAATKGVADWVAELAPDCICMQEIRVQASDVEGRFEEMAGLKGHFHFAE 62
           K+   N+NGLR A    +A  + +  PD I +QE +V  SD +    ++  L  H H+  
Sbjct: 2   KIVCFNINGLR-ARPHQLAALIEKHQPDVIGLQETKV--SDDQFPLADVQALGYHVHYHG 58

Query: 63  KKGYAGTAVYTKHAPSQVVVGWGDAEFDAEGRYLELRF-DTPKRKFSVISCYFPSGSSGE 121
           +KG+ G A+ ++  P  +  G+   E DA+ R++   F D      ++++ YFP G S +
Sbjct: 59  QKGHYGVALLSRQPPLSLHKGFATDEEDAQRRFIWGTFADANGSPITIMNGYFPQGESRD 118

Query: 122 ERQEAKFRFLKGFFPHLVAL-----KKEREFVLCGDINIAHQQIDL-------KNWRGNQ 169
                KF   + F+  L AL     + ++  ++ GD+NI+ Q  D+       K W    
Sbjct: 119 --HPTKFPAKQRFYSDLQALLESQFRNDQPVLVMGDMNISPQDCDIGIGPDNAKRWLKTG 176

Query: 170 KNSGFLPEERAWMTRLLDAGTEGAGLVDVYRKLKPDTTDEAYTWWSNRGQAYANNV--GW 227
           K S FLPEER WM RL     +G GLVD +R L PD TD  ++W+  R + + +    G 
Sbjct: 177 KCS-FLPEEREWMERL-----KGWGLVDSFRHLYPDVTDR-FSWFDYRSRGFEDEPKRGL 229

Query: 228 RLDYHLAT----PAIGALARTEQIYKTVKFSDHAPITVE 262
           R+D  +A+    P I A     ++    K SDHAPI +E
Sbjct: 230 RIDLIMASQQLVPRIKAAGVDYELRGMEKPSDHAPIWLE 268