Pairwise Alignments

Query, 657 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Variovorax sp. SCN45

Subject, 632 a.a., penicillin-binding protein 2 from Pseudomonas simiae WCS417

 Score =  507 bits (1306), Expect = e-148
 Identities = 275/615 (44%), Positives = 388/615 (63%), Gaps = 20/615 (3%)

Query: 4   IRNVAADLARFKRRVIVIGLAVLFAFGLLCARLVYLQVTRHEDLAEQAESNRTAVVPVVP 63
           I++   D    + RV+   + V+   G+L ARL +LQV +++  +  +E+NR  V P+ P
Sbjct: 7   IKDHEKDARLVRSRVVFGAIMVVALLGVLIARLYFLQVIQYDYHSTLSENNRVHVQPIPP 66

Query: 64  NRGLILDRNGIVLASNYSAYTLEITPSKVGDVEETIDSLTQVLEISPRDRRRF-KRLRED 122
            RGLI DRNG+V+A N  +++L +T  + GD ++ +D + +VL+++P DR  F KR+++ 
Sbjct: 67  TRGLIFDRNGVVVADNRPSFSLSMTRERSGDWQQILDVIVEVLQLTPEDRAIFEKRMKQG 126

Query: 123 SRSFDSIPIRTRLSDEEVARFAAQRYRFPGVEIKARLFRNYPQGELASHVLGYIGRINQR 182
            R F+ +PI   L++E++AR A  ++R PGVE+ A+L R+YPQG   +H +GY+GRIN++
Sbjct: 127 RRPFEPVPILFELTEEQIARIAVNQFRLPGVEVVAQLVRHYPQGPHFAHSVGYMGRINEK 186

Query: 183 EKTAMEDWDEEEQANYKGTDYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLASHP 242
           E   ++        NY GT +IGK GIE+ YE  LHGQ G E++ET+A GR +R L    
Sbjct: 187 ELKTLDP------VNYSGTHHIGKTGIERFYEPELHGQVGYEEVETNARGRVLRVLKRTD 240

Query: 243 ATPGNTVMLSLDIKLQKLVEDMFGDRRGAVVAIDPKTGEVLAFVSKPTFDPNLFVEGIDN 302
             PG  ++LSLDIKLQ+  E   G RRGAVVA+DPKTGEVLA VS+P+FDPNLFV GI  
Sbjct: 241 PVPGKDIVLSLDIKLQEAAEMALGGRRGAVVALDPKTGEVLAMVSQPSFDPNLFVTGISF 300

Query: 303 ESWAALTESIDKPLLNRALRGTYPPGSTYKPFMALAALQTGKRGPSVVVNDPGYFNFGGH 362
           +++A L +SID+PL NR LRG YPPGST KP +A+A L  G    S  V DPGY+    +
Sbjct: 301 KAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDAGVVTASSRVFDPGYYMLPNY 360

Query: 363 RFGSPEGNLGG---VDMRRAIQLSSNIYFYSLANEMGVDLIHDSMKPLGFGQITGIDLGG 419
                  N  G   VD+  AI  S++ YFY LA+++G+D +   M   G GQ   +D+  
Sbjct: 361 DHKYRNWNRTGDGYVDLDTAIMRSNDTYFYDLAHKLGIDRLSAYMGKFGLGQKVSLDMFE 420

Query: 420 EVRGVLPSTEWKRNAYKRPEAKKWYAGETISLGIGQGYNNFTMLQLAQATAIVADGGLKH 479
           E  G++PS EWKR   +    + W+ GET+ LGIGQGY   T LQLAQATA+VA+ G+ +
Sbjct: 421 ESPGLMPSREWKRATRR----QAWFPGETLILGIGQGYMQATPLQLAQATALVANKGIWN 476

Query: 480 KPHLVLATRNTVSGQVVPMPQPPAENLGYTASAISVIREGLTSVV--TSGTARGVFAGAA 537
           +PHL      T+ G+      P  + +   AS  + +  G+  V+    GTAR    GA 
Sbjct: 477 RPHLA----KTIEGEKPVDDNPIPDIVLRDASDWTKVNHGMQQVMHGARGTARKAAVGAQ 532

Query: 538 YQAAGKTGTAQAVTQAQNTKYNARALEEHQRDHALFMGFAPVNDPKIAIAVIVENAGWGA 597
           Y+ AGK+GTAQ V   Q  KY+   ++E  RDHALF+GFAP +DPKI +AV+VEN   G+
Sbjct: 533 YRIAGKSGTAQVVAIKQGEKYDRTKVQERHRDHALFVGFAPADDPKIVVAVMVENGESGS 592

Query: 598 GAAAPIARRVFDYWL 612
           G AAP+ R+V D WL
Sbjct: 593 GVAAPVVRQVMDAWL 607