Pairwise Alignments

Query, 657 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Variovorax sp. SCN45

Subject, 629 a.a., transpeptidase (penicillin-binding protein 2) from Pseudomonas putida KT2440

 Score =  509 bits (1311), Expect = e-148
 Identities = 272/613 (44%), Positives = 390/613 (63%), Gaps = 22/613 (3%)

Query: 10  DLARFKRRVIVIGLAVLFAFGLLCARLVYLQVTRHEDLAEQAESNRTAVVPVVPNRGLIL 69
           D    ++RV+V  +A++    +L ARL YLQ+ +++  +  +E+NR  V P+ P RGLI 
Sbjct: 13  DARLVRKRVVVGAVAIMLLVCVLIARLYYLQIIQYDYHSTLSENNRVHVQPIPPTRGLIF 72

Query: 70  DRNGIVLASNYSAYTLEITPSKVGDVEETIDSLTQVLEISPRDRRRF-KRLREDSRSFDS 128
           DRNG+++A N  +++L +T  + G+ +E +D++ +VL+++  DR  F KR+R+  R F+ 
Sbjct: 73  DRNGVIVADNRPSFSLSMTRERAGNWQEVLDTIVEVLDLTADDRALFEKRMRQGRRPFEP 132

Query: 129 IPIRTRLSDEEVARFAAQRYRFPGVEIKARLFRNYPQGELASHVLGYIGRINQREKTAME 188
           +PI   L++E++AR A  ++R PGVE+ A+L R+YPQG   +H +GY+GRIN++E   ++
Sbjct: 133 VPILFELNEEQIARVAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYVGRINEKELKTLD 192

Query: 189 DWDEEEQANYKGTDYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLASHPATPGNT 248
                   NY GT +IGK GIE+ YE  LHGQ G E++ET+A GR +R L      PG  
Sbjct: 193 P------VNYSGTHHIGKTGIERFYEAALHGQVGYEEVETNARGRVLRVLKRTDPKPGKD 246

Query: 249 VMLSLDIKLQKLVEDMFGDRRGAVVAIDPKTGEVLAFVSKPTFDPNLFVEGIDNESWAAL 308
           ++LSLDIKLQ+  E   G RRGAVVA+DP+TGEVLA VS+P+FDPNLFV GI  +++A L
Sbjct: 247 IVLSLDIKLQEAAEAALGGRRGAVVALDPRTGEVLAMVSQPSFDPNLFVTGISFKAYAEL 306

Query: 309 TESIDKPLLNRALRGTYPPGSTYKPFMALAALQTGKRGPSVVVNDPGYFNFGGHRFGSPE 368
            +SID+PL NR LRG YPPGST KP +A+A L +G    S  V DPGY+    +      
Sbjct: 307 RDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVNASSRVFDPGYYQLPNYDHKYRN 366

Query: 369 GNLGG---VDMRRAIQLSSNIYFYSLANEMGVDLIHDSMKPLGFGQITGIDLGGEVRGVL 425
            N  G   VD+  AI  S++ YFY LA++MG+D +   M   G GQ   +D+  E  G++
Sbjct: 367 WNRSGDGWVDLDTAIMRSNDTYFYDLAHKMGIDRLSSYMNKFGIGQRVSLDMFEESAGLM 426

Query: 426 PSTEWKRNAYKRPEAKKWYAGETISLGIGQGYNNFTMLQLAQATAIVADGGLKHKPHLVL 485
           PS EWKR   +    + W+ GET+ LGIGQGY   T LQLAQATA++A+ G+ ++PHL  
Sbjct: 427 PSREWKRATRR----QAWFPGETLILGIGQGYMQATPLQLAQATALIANKGVWNRPHLA- 481

Query: 486 ATRNTVSGQVVPMPQPPAENLGY-TASAISVIREGLTSVV--TSGTARGVFAGAAYQAAG 542
               T+ G + P+   P E++     S  + +  G+  V+    GTAR   AGA Y+ AG
Sbjct: 482 ---KTIEG-LPPVDDNPMEDIVLRDKSDWAKVTHGMEQVMHNARGTARKAAAGAQYRIAG 537

Query: 543 KTGTAQAVTQAQNTKYNARALEEHQRDHALFMGFAPVNDPKIAIAVIVENAGWGAGAAAP 602
           K+GTAQ V   Q  KY+   L+E  RDHALF+ FAP   PKI ++V+VEN   G+G AAP
Sbjct: 538 KSGTAQVVAIKQGEKYDRNKLQERHRDHALFVAFAPAEAPKIVVSVMVENGESGSGVAAP 597

Query: 603 IARRVFDYWLADQ 615
           + R++ D WL D+
Sbjct: 598 VVRQIMDAWLLDE 610