Pairwise Alignments

Query, 657 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Variovorax sp. SCN45

Subject, 636 a.a., peptidoglycan DD-transpeptidase MrdA from Dickeya dianthicola ME23

 Score =  453 bits (1165), Expect = e-131
 Identities = 249/637 (39%), Positives = 382/637 (59%), Gaps = 20/637 (3%)

Query: 5   RNVAADLARFKRRVIVIGLAVLFAFGLLCARLVYLQVTRHEDLAEQAESNRTAVVPVVPN 64
           R+  A+ A F RR +V  L +L   G+L A L +LQV R +D   ++  NR  +VP+ P+
Sbjct: 9   RDYTAEAALFVRRALVAFLGILLLSGILVANLYHLQVLRFDDYRTRSNENRIKLVPIAPS 68

Query: 65  RGLILDRNGIVLASNYSAYTLEITPSKVGDVEETIDSLTQVLEISPRDRRRFKRLREDSR 124
           RG+I DRNG  LA N + Y LE+ P KV ++EET+ +L  +++++  D   F++ R+ SR
Sbjct: 69  RGIIYDRNGTPLALNRTIYQLELIPEKVNNLEETLQALKSIIDLTDEDIDNFRKERKRSR 128

Query: 125 SFDSIPIRTRLSDEEVARFAAQRYRFPGVEIKARLFRNYPQGELASHVLGYIGRINQREK 184
            F SIP++T L++ +VA FA  +YRFPGVE+K    R YP G   +HV+GY+ +IN ++ 
Sbjct: 129 RFTSIPVKTGLNEVQVASFAVNQYRFPGVEVKGYQRRYYPYGAALTHVIGYVSKINDKDL 188

Query: 185 TAMEDWDEEEQANYKGTDYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLASHPAT 244
             ++   E E A+Y  T  IGKLGIE+ YE  LHG+ G E++E +  GR +R+L   P  
Sbjct: 189 ERLD--QEGELADYAATHDIGKLGIERYYEDVLHGKPGYEEVEVNNRGRVIRQLHEQPPQ 246

Query: 245 PGNTVMLSLDIKLQKLVEDMFGDRRGAVVAIDPKTGEVLAFVSKPTFDPNLFVEGIDNES 304
            G  + L+LD+ LQ  +E +    R AVV  DPK   +LA VS P++DPNLFV+GI +++
Sbjct: 247 AGKDITLTLDLNLQLYIEKLLAGSRAAVVVTDPKDASILAMVSTPSYDPNLFVDGISSKT 306

Query: 305 WAALTESIDKPLLNRALRGTYPPGSTYKPFMALAALQTGKRGPSVVVNDPGYFNFGG--H 362
           + AL    ++PL+NRA +G YPP ST KP++A++AL  G   P   + DPG++   G   
Sbjct: 307 YHALLNDPNRPLINRATQGVYPPASTVKPYIAVSALSAGVITPYTSLFDPGWWQLPGSEK 366

Query: 363 RFGS-PEGNLGGVDMRRAIQLSSNIYFYSLANEMGVDLIHDSMKPLGFGQITGIDLGG-- 419
           RF    +   G +++ ++++ S++ +FY ++ +MG+D + + M   G+G  TGIDL    
Sbjct: 367 RFRDWKKWGHGRLNLTKSLEESADTFFYQVSYDMGIDRLSEWMSKFGYGHRTGIDLSDKE 426

Query: 420 EVRGVLPSTEWKRNAYKRPEAKKWYAGETISLGIGQGYNNFTMLQLAQA-TAIVADGGLK 478
           E  G++P+ EWK   YK+P    WY G+TI +GIGQGY   T +Q+ +A T ++ DG +K
Sbjct: 427 ESPGIMPTREWKMKRYKKP----WYQGDTIPVGIGQGYWTATPIQMLKALTTLINDGQVK 482

Query: 479 HKPHLVLATRNTVSGQVVPMPQPPAENLGYTASAI-SVIREGLTSVVT--SGTARGVFAG 535
             PHL+ +T+   +   VP  Q   + +G   S    ++++G+  V    +GTA   FA 
Sbjct: 483 -APHLLSSTQE--NNTQVPYRQSEHQQIGDIRSGYWEIVKDGMYGVANRQNGTAHKFFAD 539

Query: 536 AAYQAAGKTGTAQAVTQAQNTKYNARALEEHQRDHALFMGFAPVNDPKIAIAVIVENAGW 595
           ++Y+ A K+GTAQ     +N  YNA  + E  RDH L + FAP ++PK+A+++I+EN G 
Sbjct: 540 SSYKIAAKSGTAQVFGLKENETYNANRIAERLRDHKLMVAFAPYSNPKVAMSIILENGGA 599

Query: 596 GAGAAAPIARRVFDY-WLADQYPSEADMAAIKIGKAT 631
           G  A   I R++ D+  L D   S  D      G  T
Sbjct: 600 GP-AVGTIVRQILDHIMLGDNNTSLPDAPPSPPGSET 635