Pairwise Alignments

Query, 410 a.a., Tetracycline resistance, MFS efflux pump => Tet(C) from Variovorax sp. SCN45

Subject, 167 a.a., hypothetical protein from Variovorax sp. SCN45

 Score =  124 bits (310), Expect = 3e-33
 Identities = 69/156 (44%), Positives = 89/156 (57%), Gaps = 3/156 (1%)

Query: 203 SQPFDRGVLHPLAP---LRWATSFPALLPLLGVFLLLVLVGEVAGTTWVIYGQDRYAWNG 259
           ++P     L  LAP   LR     P L PLL ++L + L G+V GT W IYG DR+ WN 
Sbjct: 12  AEPRRAPALRELAPWHALRELGRLPDLAPLLWLYLAMQLAGQVPGTLWAIYGHDRFGWNP 71

Query: 260 TMVGLSLAVFGLLHALVQGFVAGPLVERWGERAAIAVGIIADGTGYALIAFATQGWMAIA 319
           T +GLSLAVFG++H+L Q F  G + +R+G    +  G+I+D  GY   AFA        
Sbjct: 72  TAIGLSLAVFGVIHSLFQAFATGRISDRFGPAKTLIGGVISDVLGYLTFAFARSAATLAP 131

Query: 320 MLPLLCMGGVCAPALQATLSARVGQAQQGRLQGVLA 355
            L L   GG+  PAL A  S R  +A+QG LQGVLA
Sbjct: 132 GLLLAAGGGIGGPALLAMSSERTDEARQGALQGVLA 167



 Score = 30.4 bits (67), Expect = 4e-05
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 40  VPSLLREVGHTGDLGWR---FGAFLSLYALMQFLC-APVLGALSDRFGRRPVLLISVAGS 95
           VP  L  +      GW     G  L+++ ++  L  A   G +SDRFG    L+  V   
Sbjct: 54  VPGTLWAIYGHDRFGWNPTAIGLSLAVFGVIHSLFQAFATGRISDRFGPAKTLIGGVISD 113

Query: 96  AIDALFMAFAPSLWMLFLGRAIAGMTGASTAVASAAIADLTPE 138
            +  L  AFA S   L  G  +A   G       A  ++ T E
Sbjct: 114 VLGYLTFAFARSAATLAPGLLLAAGGGIGGPALLAMSSERTDE 156