Pairwise Alignments

Query, 264 a.a., ABC-type spermidine/putrescine transport system, permease component II from Variovorax sp. SCN45

Subject, 271 a.a., Inner membrane ABC transporter permease protein YdcV from Xanthobacter sp. DMC5

 Score =  150 bits (379), Expect = 3e-41
 Identities = 80/244 (32%), Positives = 137/244 (56%), Gaps = 6/244 (2%)

Query: 11  FNALVIV----FMLAPLVVVCIVAFTPENTLTIPTTRFSLRWFEAVFAHPDFMQSFWNSL 66
           FN   IV    F+  P++++ I +F     +T+    FS +W+ ++  +   + + W +L
Sbjct: 8   FNVTSIVLGFAFLYIPIILLVIYSFNASRLVTV-WAGFSTQWYWSLLENEQLIDAAWVTL 66

Query: 67  WLALSSATIATLLAVPAGMAITRY-EFAGRDFLNGLFLSPLIVPHLVLGVALLRLFALVG 125
            +A  S+ +AT+L   A +A+TRY  F GR   +G+  +PL++P ++ G++LL LF  V 
Sbjct: 67  RIAFFSSLVATVLGTMAALALTRYGRFGGRTLFSGMIYAPLVMPEVITGLSLLLLFVAVN 126

Query: 126 GTGSFGWLVMAHALIVTPYTLRLVVAALVGFDRSAEQAALSLGASQATVFRRITLPMILP 185
               F  +++AH      +   +V + LV FDR+ E+AAL LG      F +ITLP+ILP
Sbjct: 127 FDRGFWTVLLAHITFTMCFVAVVVQSRLVTFDRTLEEAALDLGCPPFQTFFKITLPLILP 186

Query: 186 GVTGGWMLAFINSFDEVTMSIFVTAPSTVTLPVRMYMYATESIDPLMAAVSALMVAVTAC 245
            V  G+MLAF  S D++ ++ F T P   TLP+R+Y      + P + AV  +++A+   
Sbjct: 187 AVVSGFMLAFTLSLDDLVIASFTTGPGATTLPMRIYSQVRLGVTPEINAVCTILIAIVTV 246

Query: 246 AMVL 249
            +++
Sbjct: 247 VVIV 250