Pairwise Alignments

Query, 264 a.a., ABC-type spermidine/putrescine transport system, permease component II from Variovorax sp. SCN45

Subject, 297 a.a., spermidine/putrescine ABC transporter - permease subunit from Pseudomonas putida KT2440

 Score =  117 bits (292), Expect = 4e-31
 Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 12/236 (5%)

Query: 14  LVIVFMLAPLVVVCIVAFTPENTLTIPTTRFSLRWFEAVFAHPDFMQSFWNSLWLALSSA 73
           L ++F+  P++++ I +F     +T+    +S++W+  +  +   M S   SL +A  +A
Sbjct: 13  LGLLFIYLPMLILVIYSFNASKLVTV-WGGWSIKWYVGLLDNSQLMGSVMRSLEIACYTA 71

Query: 74  TIATLLAVPAGMAITRY-EFAGRDFLNGLFLSPLIVPHLVLGVALLRLFALVGGTGSFGW 132
             A  L   A   +TR   F GR    GL  +PL++P ++ G++LL LF  V      GW
Sbjct: 72  VAAVALGTLAAFVLTRVTRFKGRTLFGGLVTAPLVMPEVITGLSLLLLF--VAMAQMIGW 129

Query: 133 --------LVMAHALIVTPYTLRLVVAALVGFDRSAEQAALSLGASQATVFRRITLPMIL 184
                   + +AH      Y   +V A L   D S E+AA+ LGA    VF  IT+PMI 
Sbjct: 130 PQERGIVTIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGAKPWKVFFLITIPMIA 189

Query: 185 PGVTGGWMLAFINSFDEVTMSIFVTAPSTVTLPVRMYMYATESIDPLMAAVSALMV 240
           P +  G M++F  S D++ ++ FV+ P + TLP+ ++      + P + AV++L++
Sbjct: 190 PSLAAGGMMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVASLIL 245