Pairwise Alignments

Query, 286 a.a., ABC-type spermidine/putrescine transport system, permease component I from Variovorax sp. SCN45

Subject, 306 a.a., spermidine/putrescine ABC transporter - inner membrane subunit from Pseudomonas putida KT2440

 Score =  154 bits (389), Expect = 2e-42
 Identities = 86/273 (31%), Positives = 150/273 (54%), Gaps = 14/273 (5%)

Query: 16  PALVLFTALLLVPLALTAVLSFNVYDPATGPKSGEFT-----------LAHYALVFSDSY 64
           P + LF   +L P  +   +SF   D A  P +  +T           LA+Y L+  D  
Sbjct: 25  PFIWLFLFFML-PFFIVLKISFAEADVAIPPYTEIYTYVEDKIQLVLNLANYGLLTEDEL 83

Query: 65  YLGIFWRTFWVSALVTLICVLVGAPEAYVLSRMRNPWRSALLLVVLAPLLVSVVVRAFGW 124
           YL  +  +  ++   TL+C+L+G P AY ++  +   ++ LLL+++ P   ++++R + W
Sbjct: 84  YLSAYLGSLKMAFFSTLLCLLIGFPMAYAIANAKKETQTVLLLLIMMPTWTAILIRVYAW 143

Query: 125 SMLLGPEGAVNALLRLVGI--GPVKILYTNAAVVIALVHVMLPFMVIPVWTSLQKLDPGV 182
             +L   G +N  L   G+   P++IL TN AV I +V+  LPFM++P++ +L K DP +
Sbjct: 144 MGILSNNGLLNGFLLWTGLIDQPLQILNTNLAVYIGVVYSYLPFMILPLFANLVKHDPSL 203

Query: 183 ENAALSLNATPFTTLRRIVLPQVMPGILSGSLLVFGLAASSFAIPGLLGGRRLKMVATIV 242
             AA  L ++ F +  +I +P    GI++G +LVF      F IP LLGG    M+  ++
Sbjct: 204 LEAASDLGSSTFNSFWKITVPLSKNGIIAGCMLVFIPVVGEFVIPELLGGPETLMIGKVL 263

Query: 243 YDEYLSELNWPLGAAVALVLLVANLVVMLSYNR 275
           + E+ +  +WP+ +A+A+V+L   +V +L +NR
Sbjct: 264 WQEFFNNRDWPVASALAVVMLAILIVPILLFNR 296