Pairwise Alignments

Query, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  327 bits (839), Expect = 5e-94
 Identities = 200/450 (44%), Positives = 268/450 (59%), Gaps = 29/450 (6%)

Query: 1   MPFDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLL 60
           M F SLGL+ ALV A   +GY  PT +Q  AIPA+LQGRD+  +AQTG+GKT  F+LP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  QRLGAERPPGSTRR-----VRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVS 115
           +RL     P  ++R      R LVL PTRELAAQV ++ +  A+ LP  L     FGGV 
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLP--LVSACIFGGVG 118

Query: 116 INPQMMSLRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRIL 175
           +NPQ+ ++  G D++VA PGRLLDLA    + L  V  LVLDEADR+ D+GF  ++ ++L
Sbjct: 119 MNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVL 178

Query: 176 ALLPRQRQNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARRTQ 235
           A LP +RQNLLFSATF   I  LAD  L +P  I+V     T   I QRV  + A+ +  
Sbjct: 179 ARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRA 238

Query: 236 LLRHLLKQHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFK 295
           LL HL+    G W++VLVF  T+H A  +AE L K G+ A   HG+ +Q  RT  LA FK
Sbjct: 239 LLAHLITL--GAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFK 296

Query: 296 QSRWDVVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAA 355
            +   V++ATD+AARG+DI QLP V+N++LP    DY+HRIGRTGRAG SG AIS V+  
Sbjct: 297 ANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPD 356

Query: 356 SEAHFRLIEKRQGLSLPRERVEGFEPTEVAPPVVDA------SGTGGIK----------- 398
            E   + IE+     +    + GF+ ++V     +A      +G GG             
Sbjct: 357 EEKLLKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDT 416

Query: 399 --GKRPSKKDKLRAAAAKAAAREEVAGKSG 426
             G++   KDK + A  +AAA+ +   KSG
Sbjct: 417 NGGRKDKGKDKGK-ARQQAAAKPDDKEKSG 445