Pairwise Alignments

Query, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

Subject, 629 a.a., ATP-dependent RNA helicase DeaD from Escherichia coli ECRC62

 Score =  278 bits (712), Expect = 3e-79
 Identities = 156/378 (41%), Positives = 220/378 (58%), Gaps = 8/378 (2%)

Query: 3   FDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLLQR 62
           F  LGL   ++ A  + GY  P+ IQA  IP +L GRDV G AQTGSGKTAAFSLPLLQ 
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 63  LGAERPPGSTRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVSINPQMMS 122
           L  E      +  + LVL PTRELA QV E +   ++H+   + +V  +GG   + Q+ +
Sbjct: 68  LDPE-----LKAPQILVLAPTRELAVQVAEAMTDFSKHM-RGVNVVALYGGQRYDVQLRA 121

Query: 123 LRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRILALLPRQR 182
           LR G  IVV TPGRLLD      L L  ++ LVLDEAD +  +GF E++  I+A +P   
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181

Query: 183 QNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARRTQLLRHLLK 242
           Q  LFSAT P AI+ +    +++P  + +Q    T P+I Q    V   R+ + L   L+
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241

Query: 243 QHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFKQSRWDVV 302
             +  +D  ++FV T++A   VAE L +NG  +   +GD+ Q  R   L + K  R D++
Sbjct: 242 AED--FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 303 IATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAASEAHFRL 362
           IATD+AARG+D+ ++ +V+NYD+P     Y+HRIGRTGRAG +G A+ FV        R 
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 363 IEKRQGLSLPRERVEGFE 380
           IE+   L++P   +   E
Sbjct: 360 IERTMKLTIPEVELPNAE 377