Pairwise Alignments

Query, 405 a.a., Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 378 a.a., branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) from Pseudomonas putida KT2440

 Score = 89.4 bits (220), Expect = 2e-22
 Identities = 90/347 (25%), Positives = 144/347 (41%), Gaps = 32/347 (9%)

Query: 2   KKNFLISALALGVALCATAPAALAQAEPGLTDKTIKIGMFSPMSGASMNYGFDVINAAKM 61
           KK FL  ALA+  AL     ++  QA+       +KIG+  PM+GA+  +G   +  A+ 
Sbjct: 7   KKGFL--ALAVATAL---GVSSYVQAD-------VKIGVAGPMTGANAAFGEQYMKGAQA 54

Query: 62  YYDKINKEGGVNGRKIELVVEDDRCNANDLLAAVKKLTEQDQVFLLNGGSCSAAVVGARE 121
             DKIN  GGVNG KI LV  DD C     +A   +L +QD+V  + G  CS+  + A E
Sbjct: 55  AADKINAAGGVNGEKIVLVKGDDACEPKQAVAVANRLVDQDKVIGVVGHFCSSNTIPASE 114

Query: 122 YVERAKIPLVMLNASGDGALYPPSKYIYGAFSI-----SQHAVGGSMVQFASEHLKAKKI 176
             + A +  +     G        + +   F +      Q  V G    +  + LK KK+
Sbjct: 115 VYDEAGVIAI---TPGSTNPQVTERGLSAMFRMCGRDDQQGIVAG---DYIVDVLKGKKV 168

Query: 177 GYINHDDAYGGWNLESAQAQAKALGGIDLQVQSVNPNITDVTAPMLKIKAANPDVLLLTT 236
             ++  D YG    ++ +AQ +  G   +  + +     D +A + KI++   DV+    
Sbjct: 169 AVLHDKDTYGQGLADATKAQLEKRGVKPVLYEGLTRGEKDFSAVVTKIRSTGADVVYFGG 228

Query: 237 YARPVSLIVKRAFELGFNKPIVLAVNSTADLKQLVENVGNKDAFKNVYIQEVLADVPGGP 296
                  +V++  E G  K +    +      +LV   G       VY+    AD    P
Sbjct: 229 LHPEAGPLVRQLREQGL-KDVKFMSDDGIVTDELVSTAGGAQYVDGVYM-TFGADPRLLP 286

Query: 297 KLKWVYDMYKAAYPDLASKPGHPQAYMPYGIPPAMAVVNALKAAGPN 343
             K V + ++ A  +       P+ Y  Y      A+  A   A  N
Sbjct: 287 DSKAVVEEFRKAGTE-------PEGYTLYAYASLQALAAAFNGAKSN 326