Pairwise Alignments

Query, 300 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

 Score =  117 bits (294), Expect = 3e-31
 Identities = 88/306 (28%), Positives = 157/306 (51%), Gaps = 18/306 (5%)

Query: 8   LFVQQGVLSGIVTGSVYALLAVAIVMVFKTTDVPNFSQGEIFMAGGYAALFPLVVWGW-- 65
           +F+QQ +++G+  GSVY L+A+   MV+    + NF+ GE++M   Y A   L +  +  
Sbjct: 4   IFLQQ-LVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFG 62

Query: 66  ------PYWGAVLASIAVTALLAALFQRVVMQRVTASRGVGVQLVIATLGFAYLLKGLVR 119
                    G ++ ++ VT +   + +RV  + +  S  +    +I+ +G + +L+   +
Sbjct: 63  IESFPLLILGTLIFTVVVTGVYGWVIERVAYKPLRNSTRLAP--LISAIGISLILQNYAQ 120

Query: 120 KTGLGDTPRSLPSLVP---QDPIMIGQASLTLLDLAIFGSAVVVMVLLYLMFTRTRTGQA 176
               G   + +P+L+    +  I  G   LT   + I  +A   M LL  +   T+ G+ 
Sbjct: 121 -IAQGAKQQGIPTLLAGAWRVDIGSGFVQLTYTKVFILVAAFAGMALLTYVIKYTKLGRM 179

Query: 177 MRAVGMNPRGAQIVGVKLGSIRMKIWALTGVISAISALLITPKILITPDIGH--IAILAY 234
            RA   + + A I+G+    +   ++ +   ++A++ +LIT             I I A+
Sbjct: 180 CRATQQDRKMASILGINTDRVISYVFVIGAAMAALAGVLITLNYGTFDFYAGFIIGIKAF 239

Query: 235 AAAIVGGFTSLPGAVVGGFIIGIVENLVGLFISSNAIVVAPFVAIMVVLLVRPQGLLGGK 294
            AA++GG  SLPGA++GG I+GI E+L    I+S+   V  F  ++V+L+ RPQGLL G+
Sbjct: 240 TAAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVVILIFRPQGLL-GR 298

Query: 295 PQVKKV 300
           P V KV
Sbjct: 299 PLVAKV 304