Pairwise Alignments

Query, 300 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score =  119 bits (297), Expect = 1e-31
 Identities = 89/306 (29%), Positives = 158/306 (51%), Gaps = 18/306 (5%)

Query: 8   LFVQQGVLSGIVTGSVYALLAVAIVMVFKTTDVPNFSQGEIFMAGGYAALFPLVVWGW-- 65
           +F+QQ +++G+  GSVY L+A+   MV+    + NF+ GE++M   Y A   L +  +  
Sbjct: 4   IFLQQ-LVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFG 62

Query: 66  ------PYWGAVLASIAVTALLAALFQRVVMQRVTASRGVGVQLVIATLGFAYLLKGLVR 119
                    G +L +I VT +     +R+  + +  S  +    +I+ +G + +L+   +
Sbjct: 63  VESFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAP--LISAIGISLILQNYAQ 120

Query: 120 KTGLGDTPRSLPSLVP---QDPIMIGQASLTLLDLAIFGSAVVVMVLLYLMFTRTRTGQA 176
               G   + +P+L+    +  +  G   LT   + I  +A V M LL  +   T+ G+ 
Sbjct: 121 -ISQGARQQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRM 179

Query: 177 MRAVGMNPRGAQIVGVKLGSIRMKIWALTGVISAISALLITPKILITPDIGH--IAILAY 234
            RA   + + A I+G+    +   ++ +  V++A++ +LIT             I I A+
Sbjct: 180 CRATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAF 239

Query: 235 AAAIVGGFTSLPGAVVGGFIIGIVENLVGLFISSNAIVVAPFVAIMVVLLVRPQGLLGGK 294
            AA++GG  SLPGA++GG I+GI E+L    I+S+   V  F  ++++L+ RPQGLL G+
Sbjct: 240 TAAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLL-GR 298

Query: 295 PQVKKV 300
           P V KV
Sbjct: 299 PLVAKV 304