Pairwise Alignments

Query, 327 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 435 a.a., High-affinity branched-chain amino acid transport system permease protein BraE from Pseudomonas putida KT2440

 Score =  168 bits (426), Expect = 2e-46
 Identities = 104/315 (33%), Positives = 171/315 (54%), Gaps = 24/315 (7%)

Query: 13  RAVLLGMAVVLAVLPFTTSGYVLYVVNLLMVFSVLALGMHLVIGETGQFALSHAAFFGIG 72
           R ++  + V+  V P   + Y+L VV L +++ +L LG+++V+G  G   L + AF+ IG
Sbjct: 106 RYIIPALIVIAIVFPIFANKYLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIG 165

Query: 73  IYTAGLINNQWQPPFFVSILAGALLSAAL-GWVIGLLALRMRDIYLALATFAFGEAMQWV 131
            Y   L   Q+    F S+L  A ++AAL G ++G   LRM   YLA+ T  FGE ++ V
Sbjct: 166 AYGLAL-GYQYLGLGFWSVLPLAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLV 224

Query: 132 FLNWESVTNGSNGLQM-KPASLG------------------GYQLMNDLQ---AYPFVIA 169
             NW S T G NG+    P   G                  G++    L+    Y  +  
Sbjct: 225 LNNWLSFTGGPNGMPAPSPTFFGLEFGRRAKDGGVPIHEFFGFEYNASLKFVFIYAVLFM 284

Query: 170 IAALMLWLTVTLSRSRLGSSFRAVRESDVAAVAMGVNTRTVKVTAFVLSAAFAGVAGGMY 229
           +   +L++   L+R  +G ++ A+RE ++A  +MG+N   VK++AF L A+ AG+AG  +
Sbjct: 285 VVLAVLYIKHRLTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTLGASTAGLAGVFF 344

Query: 230 TLFTSFIHPESLGFQTTILILTMVVVGGLGSVRGAVAGAIVFGLASELLRQAPSYQEIIY 289
             +  F++P S  F  + LIL +VV+GG+GS  G V  A V  +A ELLR    Y+ +++
Sbjct: 345 ATYQGFVNPSSFTFFESALILAIVVLGGMGSTVGVVIAAFVLTVAPELLRSFSEYRVLLF 404

Query: 290 GGILMLFMMFLPKGM 304
           G +++L M++ P+G+
Sbjct: 405 GVLMVLMMIWRPRGL 419