Pairwise Alignments

Query, 327 a.a., Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 418 a.a., branched chain amino acid transporter - permease subunit from Pseudomonas putida KT2440

 Score =  169 bits (429), Expect = 8e-47
 Identities = 97/319 (30%), Positives = 170/319 (53%), Gaps = 23/319 (7%)

Query: 9   PWWDRAVLLGMAVVLAVLPFTTSGYVLYVVNLLMVFSVLALGMHLVIGETGQFALSHAAF 68
           P   R V++G+ VV  V PF  S   + +  L++++ +L LG+++V+G  G   L +  F
Sbjct: 88  PKTQRYVIIGLIVVALVWPFFGSRGAVDIATLILIYVLLGLGLNIVVGLAGLLDLGYVGF 147

Query: 69  FGIGIYTAGLINNQWQPPFFVSILAGALLSAALGWVIGLLALRMRDIYLALATFAFGEAM 128
           + +G Y+  ++++     F+V +    L++A  G+++G   LR+R  YLA+ T  FGE +
Sbjct: 148 YAVGAYSYAMLSHYLGWSFWVCLPIAGLMAATFGFLLGFPVLRLRGDYLAIVTLGFGEII 207

Query: 129 QWVFLNWESVTNGSNGLQM--KPASLG---------GYQLMND------------LQAYP 165
           +    N    T G NG+    KP   G         G Q  ++            +  Y 
Sbjct: 208 RLFLRNLTDWTGGPNGISNIPKPEFFGLTFERRAAEGMQTFHEFFGLQYNSINKVIFLYL 267

Query: 166 FVIAIAALMLWLTVTLSRSRLGSSFRAVRESDVAAVAMGVNTRTVKVTAFVLSAAFAGVA 225
             + +A L L++   L R  +G ++ A+RE ++A  A+G+N   +K++AF L A FAG A
Sbjct: 268 VALLLALLALFVINRLLRMPIGRAWEALREDEIACRALGLNPTVIKLSAFTLGACFAGFA 327

Query: 226 GGMYTLFTSFIHPESLGFQTTILILTMVVVGGLGSVRGAVAGAIVFGLASELLRQAPSYQ 285
           G  +      + PES  F  + +IL +VV+GG+GS  G +  AIV  L  EL+R+   Y+
Sbjct: 328 GSFFAARQGLVTPESFTFIESAIILAIVVLGGMGSQLGVILAAIVMILLPELMREFSEYR 387

Query: 286 EIIYGGILMLFMMFLPKGM 304
            +++G +++L M++ P+G+
Sbjct: 388 MLMFGALMVLMMIWRPQGL 406



 Score = 23.9 bits (50), Expect = 0.008
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 42 MVFSVLAL-----GMHLVIGETGQFALSHAAFFGIGIYTAGLINNQW 83
          + F VL L     G+ LV+   G F +S  A   + ++   L + QW
Sbjct: 18 VAFPVLGLKLSIDGISLVVHSQGSFTISIIAVCSVLMFLRVLFDKQW 64