Pairwise Alignments

Query, 306 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

 Score =  136 bits (343), Expect = 5e-37
 Identities = 94/316 (29%), Positives = 156/316 (49%), Gaps = 36/316 (11%)

Query: 1   MSGILVLEQLLNGLGYGLMLFLLAAGLTLVFGIMDVLNLAHGSLFMAGAYVAAEAHTRTG 60
           M GI  L+QL+NGL  G +  L+A G T+V+GI+ ++N AHG ++M  AY+AA +     
Sbjct: 1   MDGIF-LQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLA 59

Query: 61  SFA---------AAIVIAVAVTVVVALLLEVLLMRRLYTRDHLAQVLATFGVILVADDIV 111
            F            ++  V VT V   ++E +  + L     LA +++  G+ L+  +  
Sbjct: 60  YFGIESFPLLILGTLIFTVVVTGVYGWVIERVAYKPLRNSTRLAPLISAIGISLILQNYA 119

Query: 112 TMAWGPSPVMAPTPAALSGPVQLMDGLPYPAYRLVILAGGLLVALALY-LLVNHTRIGMR 170
            +A G      PT  A +  V +  G     Y  V +       +AL   ++ +T++G  
Sbjct: 120 QIAQGAKQQGIPTLLAGAWRVDIGSGFVQLTYTKVFILVAAFAGMALLTYVIKYTKLGRM 179

Query: 171 VRAGASDRPMAELMGVRVGRIFNGVFLLGAALAALAGALMGPIVAVQVG-----MGEAIL 225
            RA   DR MA ++G+   R+ + VF++GAA+AALAG L    + +  G      G  I 
Sbjct: 180 CRATQQDRKMASILGINTDRVISYVFVIGAAMAALAGVL----ITLNYGTFDFYAGFIIG 235

Query: 226 IPALVVLVIGGIGSVRGAFVAALLVGVVDTVGRAFVPMLLRATLPPATAADLGPLFAEVA 285
           I A    V+GGIGS+ GA +  +++G+ +++    +                   + +V 
Sbjct: 236 IKAFTAAVLGGIGSLPGAMLGGIILGISESLFSGLI----------------NSDYKDVF 279

Query: 286 MYALMVVVLIFRPSGL 301
            ++L+VV+LIFRP GL
Sbjct: 280 SFSLLVVILIFRPQGL 295