Pairwise Alignments

Query, 401 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

 Score = 81.3 bits (199), Expect = 5e-20
 Identities = 101/369 (27%), Positives = 158/369 (42%), Gaps = 22/369 (5%)

Query: 13  RTLLSLLLCGAALGT----AVQAVA-APVKVGLALDISGPFAALGAEARDGFALGIKQLG 67
           RTLL   L   ALG+    A +A A  P+       +SG FA+ G  A  G  L I +  
Sbjct: 4   RTLLKAGLALGALGSLPLGAHRAFADQPLTFYGLKSMSGAFASYGKYADMGSRLAIAE-H 62

Query: 68  GKLGGQDVEFVQADMAGSPDQAKQLVDRMIQRDKIDLFSGPIGSNVALAVGPTLFNAKVP 127
            +L G  +++   D  G+  +A + V   I +D    F G   S+ ALAV   +  A   
Sbjct: 63  PQLLGHPLKYKVIDTEGNAGKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKEIHKAGGV 122

Query: 128 YLSANAGPSQFAGAQCNAYFFGTAYQN-DQFHEAAGKFAQDRA-FKKIVLIAPNYPAGKD 185
           +++   G  +  G  CNA  F  +        E     ++     K+   I P Y  G  
Sbjct: 123 FMTP-VGADEITGKDCNASTFRWSVPTYGAIRETLVPMSRQLPQAKRWYTITPQYVFGDA 181

Query: 186 ALGGFKRQFKGQVADEL---YTKLGQIDYAAELAQLRAAKPDSIYFFLPGAMGINFIKQF 242
            L   ++ F     + +   Y  L + +++  L    AAKPD +     G+   N ++Q 
Sbjct: 182 LLDNARKVFAELGVEHIGNSYHSLQEQEFSGYLTNAIAAKPDVLVLLNFGSQASNALRQA 241

Query: 243 VGAGLSKDITLVTSGFSADEDVIGAVGEPML-GLFNTSHWAHDLDNPANKAFVAAFRKEY 301
           V  G+ KD   V   +SA  D    +G  +L G++  + + H +D P NK  VAA RK Y
Sbjct: 242 VNFGI-KDRMKVLMVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNKLLVAATRKAY 300

Query: 302 --NGRYPSVYAAQAYDAILAMDAAVKQSGGNAQNREAVIAALKKANYASTRG-SFKYANN 358
             N  YP   AA      + ++A VK     + +  AV AAL+   +    G       +
Sbjct: 301 GINPNYP--LAADYIGTKVMLEAIVK---AGSLDGAAVSAALQGMRFQGPTGEELIRPGD 355

Query: 359 HYPIENFYL 367
           H  ++++YL
Sbjct: 356 HQVLKDYYL 364