Pairwise Alignments

Query, 348 a.a., ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas simiae WCS417

 Score = 56.6 bits (135), Expect = 8e-13
 Identities = 69/286 (24%), Positives = 115/286 (40%), Gaps = 21/286 (7%)

Query: 10  AAAGIGLAGASAFAQQQQAAPAAGAGLRGNASDVYVMNVMVSGVEYWFPVYEMMKQLGRT 69
           AAA   L  +SAFA    A P  G  ++  A++ +V   M  G + +   +     +  T
Sbjct: 16  AAASAALPLSSAFADDA-AKPKVGLVMKSLANEFFV--TMQDGAKTYQKEHAADFDM-IT 71

Query: 70  LGVKTRYTGTPEYDVNKQLASFEQELARKPAGILLHPMNPDPFIEPINRAAAMGIPVVTF 129
            G+K       E D + Q+    Q +  K   I++ P +    +  + +A+  GI VV  
Sbjct: 72  NGIKN------ETDTSAQIDIVNQMILAKVNAIVIAPADSKALVTVLKKASDAGIKVVNI 125

Query: 130 A----ADSPNSKRTS--FITSDNDREGTQAADAIAASMGGKGEYAVLEN-PGQDNHDRRI 182
                 D   SK     F+  DN +      D +A  +    +  ++E  P   N  +R 
Sbjct: 126 DNRLDPDVLKSKNLDIPFVGPDNRKGSKLVGDYLAKQLASGDKVGIIEGVPTTTNAQQRT 185

Query: 183 AAFINRMKTKHPGMKLVGRAASNQDPNKAYQAVLSLAQANPNLGALFMPEANSALGAAQA 242
           A + + M     GMK+V   + N + ++  +   ++    P+L AL     N ALGA  A
Sbjct: 186 AGYKDAMDAA--GMKIVSTQSGNWEIDQGQKVASAMLSEYPDLKALLAGNDNMALGAVSA 243

Query: 243 KVETKKNIKVMCC--DVNAKILDMIKSGDVFGSINPNQGMQGYMGM 286
                K  KV+    D    I  M++ G V  + +     Q   G+
Sbjct: 244 VRAAGKAGKVLVVGYDNIEAIKPMLQDGRVLATADQAAAQQAVFGI 289