Pairwise Alignments
Query, 1032 a.a., Excinuclease ABC subunit A from Variovorax sp. SCN45
Subject, 1947 a.a., Excinuclease ABC subunit A, dimeric form from Variovorax sp. SCN45
Score = 647 bits (1670), Expect = 0.0
Identities = 415/1073 (38%), Positives = 567/1073 (52%), Gaps = 144/1073 (13%)
Query: 35 LAQQRISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLS 94
+ Q I IRGAR HNL+N+DLDI ++ V+TG SGSGKSSL FDTLYAEGQRRYVE+ S
Sbjct: 1 MTQGSIRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFS 60
Query: 95 AYARQFLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTP 154
AYARQFL MDKP VD +EG+ PAI+I+Q + RSTVGT+TE++D+L+LL+ARA
Sbjct: 61 AYARQFLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAADL 120
Query: 155 YCPDHHLPLQAQTVSQMVDAVL---AIPDEPRLMILAPVAREKKGEFVELFAEMQAAGYV 211
+ + LP++ + + + A +PRL++ PV E+ + A+G+
Sbjct: 121 FDRETALPVRHDSPDSIYAQIAERAAAAGDPRLVVTFPVELPASTTAEEVTQWLSASGFT 180
Query: 212 RFRVDGQTYEYNDLPKLKKTEKHDIDIVIDRLRARPDMQQRLAESFEAALRMAEGRAIAL 271
R + + + K+ +D+V DR RA + R+ E+ E AL+ GR
Sbjct: 181 RVQSEREVATPTGPRKV-------LDVVADRFRASSAERSRVVEAIEVALKRGSGRVTVH 233
Query: 272 ELGAE-GAPDKEHLFNAKFACPICHYSLSELEPRLFSFNSPVGACPSCDGLGHREVFDPA 330
GAE AP F+ CP ++ P +FSFNS VGAC +C G G D
Sbjct: 234 ATGAEENAPTDVWKFSTGLHCPESDIRYADPIPSMFSFNSAVGACDTCRGFGRVIGVDLG 293
Query: 331 RVVAFPSLSLASGAIK-----GWDRRNGYYFSMIESVAKHYKFDVDAPFESLPASVQQVL 385
V+ L+L +GAIK W E+ D P+ L + +
Sbjct: 294 LVIPNDKLTLRAGAIKTIQTPAWKEAQDDLMRHAETAG----IPRDTPWNKLTDEQKHWV 349
Query: 386 LHGSAAEEIKFNYTMESGNFAGKKLTKKHPFEGIIPNMARRYRETDSVMVREDLARFRNL 445
+ G+ NY + GN+ + G+ A + + +R L+++R+
Sbjct: 350 IEGTP------NY--KEGNW-------NKQWYGVRRFFAYLESKAYKMHIRVLLSKYRSY 394
Query: 446 QPCPDCGGSRLR----------REARNVFLVDESARPADGGEPPRMAIFELSHLTLRD-- 493
CP C G+RL+ +E + L E G + R + L L L D
Sbjct: 395 TQCPTCSGARLKLDSLIWRIGSKEDADAVLPPEKRFMPTGAKWTRAQLEALPGLCLHDLM 454
Query: 494 --------------------SLAWFQTLKL-----------------------RGAKADI 510
SLA L R +A
Sbjct: 455 LLPIERLRKFFDRMGQGMAPSLAGGGQAALASPAASNEAESPHPNLPPAGEGARQGEAQA 514
Query: 511 ADKVVREIGLRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEP 570
+ EI RL++L+DVG+ YL+LDR + TLSGGE QRI L + +G+ L ++VLDEP
Sbjct: 515 LKLLFEEITTRLRYLHDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEP 574
Query: 571 SIGLHQRDNDRLIGTLKHLRDIGNSVIVVEHDEDMIHAADHVIDMGPGAGVHGGRVMAQG 630
SIGLH RD +R+ + LRD GN+++VVEHD ++ AAD VIDMGPG G GG+++ G
Sbjct: 575 SIGLHPRDMNRITEAMLRLRDAGNTLVVVEHDPAVMLAADRVIDMGPGPGARGGQIVFDG 634
Query: 631 TYAEVSANPDSLTGQYLSGTRKIEVPRHRTAWLPVVSKPAFNEGKKPSRFPQSPAAERRA 690
T ++ + D+LTGQYL G +KI + +R
Sbjct: 635 TTDQLR-DADTLTGQYLGGRKKIGM------------------------------GFKRL 663
Query: 691 AREAAHLATQTDLQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLYTA 750
E H + + G +NLKN++V FP+ L CVTGVSGSGKSTL+ D L A
Sbjct: 664 VSENTH--------RLILEGVREHNLKNITVDFPLARLVCVTGVSGSGKSTLIQDVLAPA 715
Query: 751 VARTLYRAHEEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAET 810
+ R +A E P AH+ + G ++ V+ VDQSPIG+T RSNPA+Y G + IRE+ A
Sbjct: 716 LMRHFGKATETPGAHDRMLGADHLGDVVFVDQSPIGKTARSNPASYVGAWDAIREIFATA 775
Query: 811 NTARERGYGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYVPCEVCHGQRYNRETLEV 870
+R+RGY +FSFN GRC C G G VEM FL DVY+ C C G+RY E LEV
Sbjct: 776 ALSRQRGYTASKFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGKRYRPEILEV 835
Query: 871 LY--KGK--NIAQILEMTVETAHEFLKAVPTIERKLRTLLDVGLSYIKLGQSATTLSGGE 926
KGK N+A +L++TV A +A + R L+ + DVGL Y+KLGQ TLSGGE
Sbjct: 836 RVERKGKSYNVADVLDLTVAEAAAVFEADRDVLRVLQPISDVGLDYVKLGQPVPTLSGGE 895
Query: 927 AQRVKLA---------LELSKRDTGR--TLYILDEPTTGLHFADIELLLKVLHQLRDAGN 975
AQR+KLA SK+ R TL++ DEPTTGLHF DI L++ L +L +AG+
Sbjct: 896 AQRLKLAGFLAEAAKGATASKQSVARKGTLFLFDEPTTGLHFDDIARLMRALRKLLEAGH 955
Query: 976 TIVVIEHNLDVIKTADWLIDMGPEGGAGGGTVVGEGTPEDIAANEASHTGRYL 1028
+++VIEHNLDVI+ +DWLID+GPEGG GGG VV EGTPE + N AS TG L
Sbjct: 956 SLIVIEHNLDVIRASDWLIDLGPEGGEGGGQVVAEGTPEQLRENRASLTGAAL 1008
Score = 504 bits (1299), Expect = e-146
Identities = 284/607 (46%), Positives = 373/607 (61%), Gaps = 59/607 (9%)
Query: 448 CPDCGGSRLRREARNVFLVDESARPADGGEPPRMAIFELSHLTLRDSLAWFQTLKLRGAK 507
CP C G+RL AR V A + G + I EL+ +++ + WF+ L L G +
Sbjct: 1376 CPTCEGTRLNATARAVSFGASLANGSGG-----IGITELARMSVTEVRQWFEGLALTGRE 1430
Query: 508 ADIADKVVREIGLRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTGVMYVL 567
A+IA +V EI RL+FL +VGL YL+LDR A TLSGGEAQRIRLA+Q+GS L GV YVL
Sbjct: 1431 AEIARDLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQGVCYVL 1490
Query: 568 DEPSIGLHQRDNDRLIGTLKHLRDIGNSVIVVEHDEDMIHAADHVIDMGPGAGVHGGRVM 627
DEP+IGLH RDN L+ L L + GN+++VVEHDED I ADH+ID+GP AG GGR++
Sbjct: 1491 DEPTIGLHARDNQILLNALHKLGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLV 1550
Query: 628 AQGTYAEVSANPDSLTGQYLSGTRKIEVPRHRTAWLPVVSKPAFNEGKKPSRFPQSPAAE 687
A+GT A++ DS TG+YL + + R+ PS PQ+
Sbjct: 1551 AEGTVADIQNAGDSQTGRYLRDAIRHPLQARRSI---------------PSPDPQA---- 1591
Query: 688 RRAAREAAHLATQTDLQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTL 747
+ + + + V GA +NL++++ P+ L VTGVSGSGKSTL D L
Sbjct: 1592 ------------EDNGEWLTVHGADLHNLQDLTATLPLHRLVVVTGVSGSGKSTLARDVL 1639
Query: 748 YTAV-----------ARTLYRAHEEP--AAHESVEGIEYFDKVINVDQSPIGRTPRSNPA 794
+V R A + P A V+G E D+V+ VDQ+PIG+TPRS PA
Sbjct: 1640 LASVQGIVVQRMTKAGRDADAAGKRPAWAGCRKVDGYETIDRVLEVDQTPIGKTPRSCPA 1699
Query: 795 TYTGLFTPIRELMAETNTARERGYGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYVP 854
TY G + IR+L A+T A+ RGYGP RFSFN GRC C+G GV +EM FLPDV VP
Sbjct: 1700 TYIGFWDTIRKLFADTLEAKARGYGPARFSFNTGEGRCPGCEGAGVRTIEMSFLPDVKVP 1759
Query: 855 CEVCHGQRYNRETLEVLYKGKNIAQILEMTVETAHEFLKAVPTIERKLRTLLDVGLSYIK 914
CEVCHG R+N ETL V ++GK+I +L+M V+ A EF ++P I L+ L DVGL Y+
Sbjct: 1760 CEVCHGARFNPETLAVSWRGKSIGDVLKMEVDEAVEFFASMPNIAHPLQLLKDVGLGYLT 1819
Query: 915 LGQSATTLSGGEAQRVKLALELSK---------RDTGRTLYILDEPTTGLHFADIELLLK 965
LGQ + TLSGGEAQR+KL ELSK + TLY+LDEPT GLH AD+E L+
Sbjct: 1820 LGQPSPTLSGGEAQRIKLVTELSKVRDDITRRGQKAPHTLYVLDEPTVGLHMADVEKLIH 1879
Query: 966 VLHQLRDAGNTIVVIEHNLDVIKTADWLIDMGPEGGAGGGTVVGEGTPEDIAANEASHTG 1025
VLH+L + G+++VVIEH+LD+I ADW+ID+GPEGG GG +V PE++ +HTG
Sbjct: 1880 VLHRLVNGGHSVVVIEHDLDLIAEADWIIDLGPEGGNAGGRIVAAAPPEEV-VRLGTHTG 1938
Query: 1026 RYLKRLL 1032
L +L
Sbjct: 1939 VALAPVL 1945
Score = 216 bits (550), Expect = 1e-59
Identities = 124/341 (36%), Positives = 182/341 (53%), Gaps = 20/341 (5%)
Query: 8 LAAAEAAEAAERARDAERERDAYLGAVL---AQQRISIRGARTHNLKNVDLDIPRNKLVV 64
LA E A + + AER Y+ + I AR HNLKN+ +DIPR K V
Sbjct: 1008 LADYELAIGPDAYKVAERAARRYIANAKKAPGSDAVQIVNAREHNLKNLSVDIPRGKFSV 1067
Query: 65 ITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMDKPDVDVIEGLSPAISIEQK 124
+TG+SGSGKS+LAFD L+ EGQRRY+ESL+AYAR +Q +P+VD + G+ P ++IEQ+
Sbjct: 1068 VTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQR 1127
Query: 125 ATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPDHHLPLQAQTVSQMVDAVLAIPDEPRL 184
+ +STVGT TE+ +LRLLY + G +C +Q QT + ++ +
Sbjct: 1128 LSRGGRKSTVGTTTEVWHFLRLLYVKLGIQHCIHDGAAVQPQTPDSIAAQLMRNFKGQHI 1187
Query: 185 MILAPVAREKKGEFVELFAEMQAAGYVRFRVDGQTYEYNDLPKLKKTEKHDIDIVIDRLR 244
+LAP+ +KG + EL + G+ RVDG P++ + ++H I++ + L
Sbjct: 1188 GLLAPLVSNRKGVYTELADWARPRGFTHLRVDGDFLPTTGFPRIDRFKEHSIELPVASLD 1247
Query: 245 ARPDMQQRLAESFEAALRMAEG-----------RAIALELGAEGAPDKEHLFNAKFACPI 293
P + L E+ AL +G RA + + + H+F+ ACP+
Sbjct: 1248 VLPSKETELREALTKALEHGKGVVHVLSELDGLRAAMMAGVSAAGIGRVHVFSTLRACPV 1307
Query: 294 CHYSLSELEPRLFSFNSPVGACPSCDGLG------HREVFD 328
C S +EL+PRLFS+NS G CP C G G R+VFD
Sbjct: 1308 CSTSYAELDPRLFSYNSKHGWCPDCVGTGVKLSKDQRKVFD 1348
Score = 152 bits (383), Expect = 3e-40
Identities = 119/355 (33%), Positives = 172/355 (48%), Gaps = 45/355 (12%)
Query: 448 CPDCGGSRLRREARNVFLVDESARPAD-GGEPPRMAIFELSHLTLRDSLAWFQTLKLRGA 506
CP CGGS FL D R D G+ R I E+ S L L A
Sbjct: 797 CPTCGGSGFEHVEMQ-FLSDVYLRCPDCDGKRYRPEILEVRVERKGKSYNVADVLDLTVA 855
Query: 507 KADIADKVVREIGLRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLA---SQIGSGLT-- 561
+A + R++ L+ ++DVGL+Y+ L + TLSGGEAQR++LA ++ G T
Sbjct: 856 EAAAVFEADRDVLRVLQPISDVGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKGATAS 915
Query: 562 -------GVMYVLDEPSIGLHQRDNDRLIGTLKHLRDIGNSVIVVEHDEDMIHAADHVID 614
G +++ DEP+ GLH D RL+ L+ L + G+S+IV+EH+ D+I A+D +ID
Sbjct: 916 KQSVARKGTLFLFDEPTTGLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWLID 975
Query: 615 MGPGAGVHGGRVMAQGTYAEVSANPDSLTGQYLSGTRKIEVPRHRTAWLPVVSKPAFNEG 674
+GP G GG+V+A+GT ++ N SLTG L+ + A P K
Sbjct: 976 LGPEGGEGGGQVVAEGTPEQLRENRASLTGAALAD--------YELAIGPDAYK------ 1021
Query: 675 KKPSRFPQSPAAERRAAREAAHLATQTDLQEIRVVGATGNNLKNVSVAFPVGLLTCVTGV 734
AER A R A+ +++V A +NLKN+SV P G + VTGV
Sbjct: 1022 ----------VAERAARRYIANAKKAPGSDAVQIVNAREHNLKNLSVDIPRGKFSVVTGV 1071
Query: 735 SGSGKSTLVNDTLYTAVAR-------TLYRAHEEPAAHESVEGIEYFDKVINVDQ 782
SGSGKSTL D L+ R R+ +PA V+ + + ++Q
Sbjct: 1072 SGSGKSTLAFDILFNEGQRRYLESLNAYARSIVQPAGRPEVDAVYGIPPTVAIEQ 1126
Score = 140 bits (354), Expect = 7e-37
Identities = 93/258 (36%), Positives = 124/258 (48%), Gaps = 51/258 (19%)
Query: 820 PGRFSFNVAGGRCEACQGDGV--------------------------VKVEMHFLPDVYV 853
P FS+N G C C G GV + E+ L D V
Sbjct: 1317 PRLFSYNSKHGWCPDCVGTGVKLSKDQRKVFDDSVRDDDNKGREQTFAEPEVEDLAD--V 1374
Query: 854 PCEVCHGQRYNRETLEVLY--------KGKNIAQILEMTVETAHEFLKA----------- 894
C C G R N V + G I ++ M+V ++ +
Sbjct: 1375 ACPTCEGTRLNATARAVSFGASLANGSGGIGITELARMSVTEVRQWFEGLALTGREAEIA 1434
Query: 895 ---VPTIERKLRTLLDVGLSYIKLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEP 951
VP I+ +L L +VGL Y+ L + A TLSGGEAQR++LA +L G Y+LDEP
Sbjct: 1435 RDLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQG-VCYVLDEP 1493
Query: 952 TTGLHFADIELLLKVLHQLRDAGNTIVVIEHNLDVIKTADWLIDMGPEGGAGGGTVVGEG 1011
T GLH D ++LL LH+L + GNT+VV+EH+ D I+ AD +ID+GP G GG +V EG
Sbjct: 1494 TIGLHARDNQILLNALHKLGEKGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRLVAEG 1553
Query: 1012 TPEDIAANEASHTGRYLK 1029
T DI S TGRYL+
Sbjct: 1554 TVADIQNAGDSQTGRYLR 1571
Score = 62.4 bits (150), Expect = 3e-13
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 40 ISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 99
+++ GA HNL+++ +P ++LVV+TG+SGSGKS+LA D L A Q V+ ++ R
Sbjct: 1598 LTVHGADLHNLQDLTATLPLHRLVVVTGVSGSGKSTLARDVLLASVQGIVVQRMTKAGRD 1657
Query: 100 FLQLMDKP------DVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYA 149
+P VD E + + ++Q PRS T D +R L+A
Sbjct: 1658 ADAAGKRPAWAGCRKVDGYETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFA 1713
Score = 31.6 bits (70), Expect = 6e-04
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 303 PRLFSFNSPVGACPSCDGLGHREV 326
P FSFN+ G CP C+G G R +
Sbjct: 1725 PARFSFNTGEGRCPGCEGAGVRTI 1748