Pairwise Alignments
Query, 1032 a.a., Excinuclease ABC subunit A from Variovorax sp. SCN45
Subject, 838 a.a., putative excinuclease ABC subunit A from Pseudomonas putida KT2440
Score = 480 bits (1235), Expect = e-139
Identities = 296/759 (38%), Positives = 409/759 (53%), Gaps = 90/759 (11%)
Query: 306 FSFNSPVGACPSCDGLGHREVFDPARVVAFPSLSLASGAIKGWDRRNGYYFSMIESVAKH 365
FS N+P GACP C GLG A +V PSL++ A+ W + + +
Sbjct: 138 FSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAWPM--AWQGQNLRDILVT 195
Query: 366 YKFDVDAPFESLPASVQQVLLHGSAAEEIKFNYTMESGNFAGKKLTKKHP-FEGIIPNMA 424
+DVD P+ LP + + +L + K P ++G A
Sbjct: 196 LGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALKRKLEPSYQGTFMG-A 254
Query: 425 RRY-----RETDSVMVREDLARFRNLQPCPDCGGSRLRREARNVFLVDESARPADGGEPP 479
RRY + S +R+ +A++ + CP C G RL+REA V
Sbjct: 255 RRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTFAG------------ 302
Query: 480 RMAIFELSHLTLRDSLAWFQTL-----------KLRGAKADIADKVVREIGLRLKFLNDV 528
+ I ELSHL+L+ F+ + +L K A ++ +E+ R+ L D+
Sbjct: 303 -LDIAELSHLSLQALAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLDL 361
Query: 529 GLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKH 588
GL YL+L+RS TLS GE QR+RLA+Q+ S L GV+YVLDEPS GLH D++ L L+
Sbjct: 362 GLGYLALERSTPTLSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQR 421
Query: 589 LRDIGNSVIVVEHDEDMIHAADHVIDMGPGAGVHGGRVMAQGTYAEVSANPDSLTGQYLS 648
L+ GNSV VVEHD D + AD ++D+GP AG HGG ++ G A ++ S T YL
Sbjct: 422 LKQAGNSVYVVEHDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYLF 481
Query: 649 GTRKIEVPRHRTAWLPVVSKPAFNEGKKPSRFPQSPAAERRAAREAAHLATQTDLQEIRV 708
+P RA R+A +++
Sbjct: 482 ---------------------------------DAPVQATRAPRQARDW--------LKL 500
Query: 709 VGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLYTAVARTLYRAHE--EPAAHE 766
G T NNL N+S AFP+G T VTG+SGSGKS+LV+ L V L A + EP A +
Sbjct: 501 EGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQRSEPEA-Q 559
Query: 767 SVE-------------GIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETNTA 813
S+E G+ +++ VDQ PIGRTPRSN ATYTGLF +R+ A T A
Sbjct: 560 SLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKCFAATEQA 619
Query: 814 RERGYGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYVPCEVCHGQRYNRETLEVLYK 873
+ +G+ GRFSFNVA GRC C+G+G V VE+ F+P VY PC C G RYN ETL V ++
Sbjct: 620 KAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAPCPTCQGARYNPETLAVSWQ 679
Query: 874 GKNIAQILEMTVETAHEFLKAVPTIERKLRTLLDVGLSYIKLGQSATTLSGGEAQRVKLA 933
G NIAQ+L++TV+ A + P R L+ L D+GL Y++LGQ AT LSGGEAQR+KLA
Sbjct: 680 GMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLRLGQPATELSGGEAQRIKLA 739
Query: 934 LELSKRDTGRTLYILDEPTTGLHFADIELLLKVLHQLRDAGNTIVVIEHNLDVIKTADWL 993
EL + G TLY+LDEPT GLH DI+ LL L++L ++G+++VV+EH++ V+ +DW+
Sbjct: 740 TELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESGHSVVVVEHDMRVVAQSDWV 799
Query: 994 IDMGPEGGAGGGTVVGEGTPEDIAANEASHTGRYLKRLL 1032
ID+GP G GG VV GTP+ +AA S T +L + L
Sbjct: 800 IDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL 838
Score = 140 bits (354), Expect = 3e-37
Identities = 70/131 (53%), Positives = 97/131 (74%), Gaps = 6/131 (4%)
Query: 40 ISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 99
I +RGAR HNLKN+D+DIPR+ LVV TG+SGSGKSSLAF TLYAE QRRY ES++ YAR+
Sbjct: 12 IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71
Query: 100 FLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPDH 159
+ + PDVD I+GL PA++++Q+ + + RS+VG+VT + +R+LY+RAG H
Sbjct: 72 LIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLYSRAG------H 125
Query: 160 HLPLQAQTVSQ 170
+ P QA ++
Sbjct: 126 YPPGQAMLYAE 136
Score = 60.1 bits (144), Expect = 6e-13
Identities = 53/161 (32%), Positives = 69/161 (42%), Gaps = 21/161 (13%)
Query: 706 IRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLYTAVARTLY-------RA 758
IRV GA +NLKN+ V P L TGVSGSGKS+L TLY R + R
Sbjct: 12 IRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRRYFESVAPYARR 71
Query: 759 HEEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETNTARERGY 818
+ V+ I+ + + Q + RS+ + T L + IR L +R Y
Sbjct: 72 LIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY-----SRAGHY 126
Query: 819 GPGR-------FSFNVAGGRCEACQGDGVV--KVEMHFLPD 850
PG+ FS N G C C G G V E +PD
Sbjct: 127 PPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPD 167
Score = 47.4 bits (111), Expect = 4e-09
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 36 AQQRISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTL--YAEGQRRYVESL 93
A+ + + G +NL N+ P +TG+SGSGKSSL L + E
Sbjct: 494 ARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALLELVGAHLGHAEQR 553
Query: 94 SAYARQFLQLMDKPDV----DVIEGLSP---AISIEQKATSHNPRSTVGTVTEIHDYLRL 146
S Q L+ D+P+ V GL + ++QK PRS + T T + D++R
Sbjct: 554 SEPEAQSLE--DEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRK 611
Query: 147 LYA 149
+A
Sbjct: 612 CFA 614