Pairwise Alignments

Query, 1032 a.a., Excinuclease ABC subunit A from Variovorax sp. SCN45

Subject, 943 a.a., excinuclease ABC subunit UvrA from Dickeya dianthicola ME23

 Score = 1263 bits (3269), Expect = 0.0
 Identities = 627/995 (63%), Positives = 778/995 (78%), Gaps = 58/995 (5%)

Query: 39   RISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 98
            +I IRGARTHNLKN++L IPR+KL+V+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR
Sbjct: 3    KIEIRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62

Query: 99   QFLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPD 158
            QFL LM+KPDVD IEGLSPAISIEQK+TSHNPRSTVGT+TEIHDYLRLL+AR G P CP+
Sbjct: 63   QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPE 122

Query: 159  HHLPLQAQTVSQMVDAVLAIPDEPRLMILAPVAREKKGEFVELFAEMQAAGYVRFRVDGQ 218
            H +PL AQTVSQMVD VL+ P+  RLM+LAP+ +E+KGE  +    +   GY+R R+DG+
Sbjct: 123  HAIPLDAQTVSQMVDNVLSQPEGKRLMLLAPIVKERKGEHTKTLENLATQGYIRARIDGE 182

Query: 219  TYEYNDLPKLKKTEKHDIDIVIDRLRARPDMQQRLAESFEAALRMAEGRAIALELGAEGA 278
              + +D PKL+  +KH ID+V+DR + R D+ QRLAESFE AL ++ G A+  ++    A
Sbjct: 183  VCDLSDPPKLELQKKHTIDVVVDRFKVRNDLAQRLAESFETALELSGGTAVVADMDDPNA 242

Query: 279  PDKEHLFNAKFACPICHYSLSELEPRLFSFNSPVGACPSCDGLGHREVFDPARVVAFPSL 338
            P  E LF+A FACP+C YS+ ELEPRLFSFN+P GACP+CDGLG ++ FDPARVV    L
Sbjct: 243  P--ELLFSANFACPVCGYSMHELEPRLFSFNNPAGACPTCDGLGVQQFFDPARVVQNGEL 300

Query: 339  SLASGAIKGWDRRNGYYFSMIESVAKHYKFDVDAPFESLPASVQQVLLHGSAAEEIKFNY 398
            SLA GAI+GWDRRN YYF M+ S+A+HY+FDV+APF++L  +VQ+V+L+GS  E I+F Y
Sbjct: 301  SLAGGAIRGWDRRNFYYFQMLRSLAEHYQFDVEAPFDNLSPAVQKVILYGSGKENIEFKY 360

Query: 399  TMESGNFAGKKLTKKHPFEGIIPNMARRYRETDSVMVREDLARFRNLQPCPDCGGSRLRR 458
              + G+ +     ++HPFEG++ NM RRY+ET+S  VRE+LA+F + +PC  C G+RLR 
Sbjct: 361  INDRGDTS----VRRHPFEGVLNNMERRYKETESTAVREELAKFISNRPCASCNGTRLRE 416

Query: 459  EARNVFLVDESARPADGGEPPRMAIFELSHLTLRDSLAWFQTLKLRGAKADIADKVVREI 518
            EAR+V+ V+++  P            +++ +++  ++A+F  +KL G +A IA+KV++EI
Sbjct: 417  EARHVY-VEQTTLP------------QIADMSIGHAMAFFHNIKLSGQRAKIAEKVLKEI 463

Query: 519  GLRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRD 578
            G RL+FL +VGLNYLSL RSAETLSGGEAQRIRLASQIG+GL GVMYVLDEPSIGLHQRD
Sbjct: 464  GDRLRFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRD 523

Query: 579  NDRLIGTLKHLRDIGNSVIVVEHDEDMIHAADHVIDMGPGAGVHGGRVMAQGTYAEVSAN 638
            N+RL+ TL HLR++GN+VIVVEHDED I AADH+ID+GPGAGVHGG+V+A+GT A++ A 
Sbjct: 524  NERLLETLIHLRNLGNTVIVVEHDEDAIRAADHIIDIGPGAGVHGGQVIAEGTAAQIMAE 583

Query: 639  PDSLTGQYLSGTRKIEVPRHRTAWLPVVSKPAFNEGKKPSRFPQSPAAERRAAREAAHLA 698
            P+SLTGQ+LSG RKIE+P                      R P  P              
Sbjct: 584  PESLTGQFLSGARKIEIP--------------------TQRIPADPG------------- 610

Query: 699  TQTDLQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLYTAVARTLYRA 758
                 + ++++GA GNNLK+V++  PVGL TC+TGVSGSGKSTL+NDTL+    R L   
Sbjct: 611  -----KVLKLIGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGG 665

Query: 759  H-EEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETNTARERG 817
               EPAA+  ++G+E+FDKVI++DQSPIGRTPRSNPATYTG+FTPIREL A    AR RG
Sbjct: 666  ELNEPAAYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPIRELFAGVPEARSRG 725

Query: 818  YGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYVPCEVCHGQRYNRETLEVLYKGKNI 877
            Y PGRFSFNV GGRCEACQGDGV+KVEMHFLPD+YVPC+ C  +RYNRETLE+ YKGK+I
Sbjct: 726  YNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKSKRYNRETLEIKYKGKSI 785

Query: 878  AQILEMTVETAHEFLKAVPTIERKLRTLLDVGLSYIKLGQSATTLSGGEAQRVKLALELS 937
             ++LEMT+E A EF  A+P + RKL+TL+DVGLSYI+LGQSATTLSGGEAQRVKLA ELS
Sbjct: 786  HEVLEMTIEEAREFFDAIPALARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKLARELS 845

Query: 938  KRDTGRTLYILDEPTTGLHFADIELLLKVLHQLRDAGNTIVVIEHNLDVIKTADWLIDMG 997
            KR TG+TLYILDEPTTGLHFADI+ LL VLHQLRD GNTIVVIEHNLDVIKTADW++D+G
Sbjct: 846  KRGTGQTLYILDEPTTGLHFADIQQLLTVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLG 905

Query: 998  PEGGAGGGTVVGEGTPEDIAANEASHTGRYLKRLL 1032
            PEGG+GGG ++  GTPE +A  E SHT R+LK +L
Sbjct: 906  PEGGSGGGEILVSGTPETVAQCEKSHTARFLKPIL 940



 Score = 62.4 bits (150), Expect = 1e-13
 Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 15/123 (12%)

Query: 703 LQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLY-----------TAV 751
           + +I + GA  +NLKN+++  P   L  VTG+SGSGKS+L  DTLY           +A 
Sbjct: 1   MDKIEIRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 752 ARTLYRAHEEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETN 811
           AR      E+P     V+ IE     I+++Q      PRS   T T +   +R L A   
Sbjct: 61  ARQFLSLMEKP----DVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVG 116

Query: 812 TAR 814
             R
Sbjct: 117 EPR 119