Pairwise Alignments

Query, 403 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 380 a.a., efflux RND transporter periplasmic adaptor subunit from Dickeya dianthicola ME23

 Score =  201 bits (511), Expect = 3e-56
 Identities = 130/355 (36%), Positives = 197/355 (55%), Gaps = 11/355 (3%)

Query: 17  LLLPAVFLVGCSP--KPAAQDPVRAVKFVTVGASEFDAQPEFSAEVRARVESRLGFRVAG 74
           LLL A  L GC+   + AA  P+R V+ VTV  S        + E+R   E+ LGFR+ G
Sbjct: 31  LLLAASLLSGCNDAGREAAAAPLRPVRTVTVAPSVAGEVLSQTGEIRPTEETALGFRLDG 90

Query: 75  KITRRQAELGQHVQAGQVLAQLDPQDYRLAAEAARAQQAAALTNRDLAAADLKRYRELRE 134
           ++  R  ++G  V+ G+V+A LD +D     ++A+A  A A  +  LA  +LKR ++L  
Sbjct: 91  RVVSRAVDVGAVVKQGEVIATLDARDSENQLQSAKADLARAAASERLAEQNLKRMKQLAP 150

Query: 135 QNFISGAELERRETTWKAAQAQLEQAQAQLSSQGNQANYTTLVADVAGIITAIEAEPGQV 194
              I+ ++L+  ++ W +A +  E AQA ++S+ ++  YT L A +AG+ITA+ A PGQV
Sbjct: 151 NGAIARSQLDEAQSNWSSAVSVRESAQASVNSEQDRLGYTRLSAPIAGVITAVSANPGQV 210

Query: 195 VQAGTPVVRIAQDGARDVVFAVPEDRATLVKTGSPVTVRGWSG-GNELQGQVREVAASAD 253
           V AG  VVR+A    RD VF V E           VTV   S    + QG VR+V+  AD
Sbjct: 211 VNAGQEVVRLATFAGRDAVFNVSERLIASGLNDPLVTVSLLSNPAIKTQGHVRDVSPLAD 270

Query: 254 AVTRTYSIKVAIDAATAPP---LGATVYARPQALAHAGATVLKLPTSALRQEGKGSAVWV 310
           A TRT+ +++++     PP   LGATV      +   G  V+ LP SAL ++G   AV+V
Sbjct: 271 AQTRTWRVRISL--VEPPPEMVLGATVQGE---VTLPGGNVINLPASALTRQGGRPAVFV 325

Query: 311 LDKSTMTVRSQAVQVATADGNEAVIASGITPGMMVVAAGVHVLSPGQKVTIYQSK 365
           +D  T T+R Q + +     ++ V+A G+  G  V  AGV  L  G+KVT+ +++
Sbjct: 326 VDPQTQTLRLQPITLRHYSDSQMVVADGLAAGDKVATAGVSKLRAGEKVTLAEAQ 380