Pairwise Alignments

Query, 403 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 384 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  209 bits (533), Expect = 8e-59
 Identities = 137/382 (35%), Positives = 204/382 (53%), Gaps = 9/382 (2%)

Query: 4   STTVFSRARSAAWLLLPAVFLVGCSPKPAAQDP--VRAVKFVTVGASEFDAQPEFSAEVR 61
           +TTV   A  A  L L    L  CS +  A+ P  VR VK   +GA +   +  +S  V+
Sbjct: 9   ATTVLKIAVVAGALSL----LASCSEEKKAEAPDVVRPVKVAEIGAPDEGRKLIYSGAVK 64

Query: 62  ARVESRLGFRVAGKITRRQAELGQHVQAGQVLAQLDPQDYRLAAEAARAQQAAALTNRDL 121
           AR E  LGF V+GKIT R   +G HV  G VLA+LDP DY+LA   A A  ++A    ++
Sbjct: 65  ARTEMNLGFHVSGKITERLVNVGDHVSPGAVLARLDPVDYKLAVTRAEADLSSARKQVEI 124

Query: 122 AAADLKRYRELREQNFISGAELERRETTWKAAQAQLEQAQAQLSSQGNQANYTTLVADVA 181
                +R + L  QN  S + LE+   +   A +  + A++ L    NQ  Y+ L +D  
Sbjct: 125 TDLAYRRAQTLAAQNATSQSALEQASLSRDQAVSSRQSAESALEQARNQVAYSDLKSDQK 184

Query: 182 GIITAIEAEPGQVVQAGTPVVRIAQDGARDVVFAVPEDRATLVKTGSPVTVRGWSGGN-E 240
           GI+T + A+ GQVV AGTPVV +A DG ++V  AVPE   +  + G  V+   W+     
Sbjct: 185 GIVTTVSADVGQVVSAGTPVVTVAVDGEKEVQIAVPEMDVSHFQPGKQVSASFWAANTIV 244

Query: 241 LQGQVREVAASADAVTRTYSIKVAIDAATAPPLGATVYARPQALAHAGATVLKLPTSALR 300
           L G+VREVA SAD  +RT+S++V++       LG T  A  +A A        +P +AL 
Sbjct: 245 LTGKVREVAQSADPQSRTFSVRVSLPEDQRVLLGMT--ATIEAKADNAVPAFSVPLAALG 302

Query: 301 QEGKGSAVWVLDKSTMTVRSQAVQVATADGNEAVIASGITPGMMVVAAGVHVLSPGQKVT 360
           ++     VWV+D+   TV S+ V+V     + A I+ G++ G++VV+AG   +    KV 
Sbjct: 303 EKDGKKVVWVVDRQKGTVSSRPVEVVDFSDDGARISKGLSTGVLVVSAGTQFMREDMKVR 362

Query: 361 IYQSKEAAAAAANAGTKASVQP 382
           + ++  +   + N+ T ASV P
Sbjct: 363 LPETVTSRFGSVNSLTTASVVP 384