Pairwise Alignments

Query, 524 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 534 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  100 bits (248), Expect = 2e-25
 Identities = 111/488 (22%), Positives = 209/488 (42%), Gaps = 31/488 (6%)

Query: 40  DPAEAFEFSSGEVVTNIYERLVQYDAKDPTLLKPGLASAWKPAADGKSIEFTLRKGAAFE 99
           D A+    +  +    +Y RLV+++ K  T + P LA+ W  + DG +  F LR+G  F 
Sbjct: 42  DTAQYTTATDNDAAEPLYNRLVEFE-KGETGVVPALATKWDISPDGMTYTFHLREGVKFH 100

Query: 100 SGNPVRP------DDVVFSFKRVL----KLNKAPAFILSQLGWTADNIDQMARKGAAPDT 149
           S    +P      DDV+F+F R+L       KA           + N +    +   P T
Sbjct: 101 SNKEFKPTRDFNADDVLFTFNRMLDPDHPFRKAYPTEFPYFNGMSLNKNIAKVEKTDPHT 160

Query: 150 LVLGWSGDFGPAYVLSVLAARPGAIVDEKLVLANEKAGDLGNQWLNRNSAGSGPYKLKLY 209
           +V+  + +   A  +  +A    AI+  +      KAG   +  +N+   G+GP+  + Y
Sbjct: 161 VVM--TLNTVDAAFIQNIAMSFAAILSAEYAEQLLKAGKPSD--INQKPIGTGPFVFQRY 216

Query: 210 KPKEVLLLEANKKAANPPKTG-NVLIKSVAESATQRL-LIESGDADIARDLASDQLDALK 267
           +    +   ANK+  +P +   + LI ++   A+ R+  +++G+  +        +DALK
Sbjct: 217 QKDSQIRYVANKQYWDPSRVKLDQLIFAINTDASVRVQKLKAGECQVTLHPRPADVDALK 276

Query: 268 TRTDVRIEEFPAAAVHFIALNLKNEKLRNPAIWEAMRYLVDYDGISTQLLKGQ-MRTHQA 326
              ++++   P   + +IA N++++      + +A+   V+   I   + +G       A
Sbjct: 277 ADPNLKLLTKPGFNLGYIAYNVRHKPFDQLEVRQALDMAVNKQSILNAVYQGAGQLAVNA 336

Query: 327 FLPVGFAGALTTNPYKADPERAKAILAKAGIK-GLEIDMDLINAQRFMD-----MAQSMQ 380
             P  ++   +      +PE+AK +L  AG+K G EI +  +  QR  +     MA+ +Q
Sbjct: 337 MPPTQWSYDDSIKDAAYNPEKAKELLKAAGVKEGTEITLWAMPVQRPYNPNAKLMAEMLQ 396

Query: 381 ATMAKAGIKLNLLPGTGAQVLTRYRARKHEAILLYWGPDFFDPHSNAKSFAYNVDNSDSA 440
           +  AK G+K+ ++     + + R +  +H+  L+ W  D  DP  N     Y+ D     
Sbjct: 397 SDWAKIGLKVKIVSYEWGEYIKRTKNGEHDVSLIGWTGDNGDP-DNWLGTLYSCDAIGGN 455

Query: 441 YQSTTTWRNSWLVPELSARTMAALKEVDPVKRAAAYQDLQREVQARSPFIITFQEQNRVA 500
             S       W  P        A    D  +R   Y+  Q+ ++ + P            
Sbjct: 456 NYS------MWCDPAYDKLIKQAKVVTDREQRTVLYKQAQQLLKQQVPITPVAHSTVNQP 509

Query: 501 LRSNVKGY 508
           L + V+G+
Sbjct: 510 LSAKVEGF 517