Pairwise Alignments

Query, 524 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 518 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 97.8 bits (242), Expect = 8e-25
 Identities = 121/528 (22%), Positives = 220/528 (41%), Gaps = 52/528 (9%)

Query: 1   LNPRICAAVAGIFLSLSAWAATPKDTLVVVKNIDDIVSLDPAEAFEFSSGEVVTNIYERL 60
           LN  +C     + L+L A  A  +  L V  N D I S +P    + ++  V+ +I E L
Sbjct: 5   LNGTLC-----VTLALGAGLAQAETALRVGLNAD-IRSTEPGVNRDENTDTVMLHIVEGL 58

Query: 61  VQYDAKDPTLLKPGLASAWKPAADGKSIEFTLRKGAAFESGNPVRPDDVVFSFKRVLKLN 120
           V +  ++   + P LA   K + DG +  FTLR    F++G  +   DV ++++R L   
Sbjct: 59  VAH--REDASVGPLLAREVKRSDDGMTYTFTLRDRVHFQNGATLTAQDVKWTWERYLNPK 116

Query: 121 ---KAPAFILSQLGWTADNIDQMARKGAAPDTLVLGWSGDFGPAYVLSVLAARPGAIVDE 177
              +  A    + G     ID        PD L + +  D  P+ +     ARP      
Sbjct: 117 TQWRCLAEFDGRGGAKITGID-------TPDPLTVVFHLD-QPSGLFLASMARPDC-GGS 167

Query: 178 KLVLANEKAGDLGNQWLNRNSAGSGPYKLKLYKPKEVLLLEANKKAANPPKTG------- 230
            ++  +  A D    W  +   G+GP+ L  +KP + ++L   K  +     G       
Sbjct: 168 GILHPDSLAAD--GSW--KAPIGTGPFSLGEWKPGQYVVLSRFKDYSPRDDAGPDGFTGK 223

Query: 231 ------NVLIKSVAESATQRLLIESGDADIARDLASDQLDALKTRTDVRIEEFPAAAVHF 284
                  V    + + ++ +  + S + D+  ++++     LK+   V+I   P  A+  
Sbjct: 224 KTALVDAVRFMVIPDPSSAKAALMSNNIDLLPNVSASDAQELKSTPGVQISFSPIMAICG 283

Query: 285 IALNLKNEKLRNPAIWEAMRYLVDYDGISTQLLKGQMRTHQAFLP--VGFAGALTTNPYK 342
           +     +  L++  I +A+ + +DY  + T L  G    + + +P    F  A     Y+
Sbjct: 284 LLFQTNDPLLKDVRIRQAIAHSLDYGQMVTALSNGTSEPNNSAIPQTSPFYSATAKQGYR 343

Query: 343 ADPERAKAILAKAGIKGLEIDMDLINAQ--RFMDMAQSMQATMAKAGIKLNLLPGTGAQV 400
            DP+ A+ +L +AG  G  I M ++N +  +  DM    QA    +G+ + +        
Sbjct: 344 YDPQEAQRLLKEAGYHGQPIKM-IVNKRYSQMFDMGLLSQAMAVASGLNIQMETLEWGTQ 402

Query: 401 LTRYRARKHEAILLYWGPDFFDPHSNAKSFAYNVDNSDSAYQSTTTWRNSWLVPELSART 460
           L RY++  ++ +   +     DP ++  S        D   +    W N    P+  A  
Sbjct: 403 LERYQSGNYQMMAFSYS-SRLDPATSFDSLM-----GDKTKEPRKVWDN----PQAQAVL 452

Query: 461 MAALKEVDPVKRAAAYQDLQREVQARSPFIITFQEQNRVALRSNVKGY 508
             A++E D  KR A +  L   +   +P +I +      ALR +VKG+
Sbjct: 453 RDAVRESDTAKRQALFDQLHTMMIHDTPMVIIYNGTVAAALRDSVKGF 500