Pairwise Alignments

Query, 524 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 530 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  104 bits (260), Expect = 7e-27
 Identities = 108/471 (22%), Positives = 203/471 (43%), Gaps = 37/471 (7%)

Query: 40  DPAEAFEFSSGEVVTNIYERLVQYDAKDPTLLKPGLASAWKPAADGKSIEFTLRKGAAFE 99
           D A+    +  +    IY RLV+++ +  T + P LA+ W+ + +G    F LR+G  F 
Sbjct: 39  DTAQYTSATDNDAAEPIYNRLVEFE-RGGTAVHPALATHWEVSDNGLRYTFHLREGVRFH 97

Query: 100 SGNPVRP------DDVVFSFKRVLKLNKA--PAFILSQLGWTADNIDQMARKGAAPDTLV 151
           S     P      DDV+F+F R+L        A+      +    +D+   +    D L 
Sbjct: 98  SNKAFSPSRTFNADDVLFTFNRMLDKGHRFRQAYPTEFPYFNGMGLDKNIARVEKTDPLT 157

Query: 152 LGWSGDFGPAYVLSVLAARPGAIVDEKL---VLANEKAGDLGNQWLNRNSAGSGPYKLKL 208
           + ++ +   A  +  LA    +I+  +    +LA+ +  D+     N+   G+GP+  + 
Sbjct: 158 VVFTLNTVDAAFIQNLAMSFASILSAEYAEQLLASGRPSDI-----NQQPIGTGPFVFQR 212

Query: 209 YKPKEVLLLEANKK--AANPPKTGNVLIKSVAESATQRLLIESGDADIARDLASDQLDAL 266
           Y+    +  + NK   AAN  K  N++     + + +   +   +  +        L AL
Sbjct: 213 YQKDSQIRYKGNKDYWAANEVKIDNLVFSINTDPSVRIQKLRRNECQVTLHPRPADLPAL 272

Query: 267 KTRTDVRIEEFPAAAVHFIALNLKNEKLRNPAIWEAMRYLVDYDGISTQLLKGQ-MRTHQ 325
           K  + +++ + P   + +IA N ++       + +AM   V+ + I   + +    R   
Sbjct: 273 KADSTLQVLQQPGFNLGYIAYNTQHPPFDRLEVRQAMDMAVNKEAILQAVYQDAGQRAVN 332

Query: 326 AFLPV--GFAGALTTNPYKADPERAKAILAKAGIK-GLEIDMDLINAQRFMD-----MAQ 377
           A  P    +  ++   PY   PE+A+ ++ +AG+K G EI +  +  QR  +     MA+
Sbjct: 333 AMPPTQWSYDDSIKDAPYA--PEKARQLIQQAGVKPGTEITLWAMPVQRPYNPNAKLMAE 390

Query: 378 SMQATMAKAGIKLNLLPGTGAQVLTRYRARKHEAILLYWGPDFFDPHSNAKSFAYNVDNS 437
            +QA  +K G K+ ++     + L R +  +H+  L+ W  D  DP  N     Y+ D  
Sbjct: 391 MLQADWSKLGFKVRIVSYEWGEYLKRMKNGEHDIALIGWTGDNGDP-DNWLGTLYSCDAI 449

Query: 438 DSAYQSTTTWRNSWLVPELSARTMAALKEVDPVKRAAAYQDLQREVQARSP 488
            S   S       W  P+  +    A +  D  +R A YQ  Q+ ++ + P
Sbjct: 450 GSNNYS------QWCDPQYDSLVKQAKQVTDRTQRTALYQQAQQRLKQQVP 494