Pairwise Alignments

Query, 298 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 310 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  366 bits (940), Expect = e-106
 Identities = 182/294 (61%), Positives = 232/294 (78%), Gaps = 2/294 (0%)

Query: 5   QDWWLSEAPASAFQARCGRWYRMGLRTVRSPAMVFGLVILAAMVLAALFAPWLAPFDPNA 64
           ++W LS+ P S  QAR GR Y +  R   +   + GLVI+ A++  ALFA  LAP +P  
Sbjct: 13  REWLLSDRPTSRKQARLGRAYVIWRRFSENRLALLGLVIIIALLFVALFADVLAPHNPVQ 72

Query: 65  QNVQQ-RLLPPGAAHWL-GTDQLGRDLLSRVIYGTRPTLLIVSLVALLSAPLGLLLGMCA 122
            +++  RLLPPG A +L GTD  GRD+LSR+I+G+R TL +V LVA+++AP+GL++G  +
Sbjct: 73  GDLRNARLLPPGTAGYLLGTDDQGRDILSRLIHGSRLTLFVVLLVAIIAAPIGLIVGTVS 132

Query: 123 GYFGGWIDTLLMRVTDIFMAFPRLVLALALVAVLGPGIVNAVIAIAITAWPAYARIARTE 182
           GY GGW+D +LMR+TDIF+AFP+LVLALALVA LGPGI NAV+AIA+T+WP YARIAR E
Sbjct: 133 GYAGGWVDAILMRITDIFLAFPKLVLALALVAALGPGIENAVLAIAVTSWPPYARIARAE 192

Query: 183 TRTVRGSDFIQAARVQGLRPARILFGHLLPICLPSTVVRVTLDMAGIILTAAGLGFLGLG 242
           T T R SDFI A ++ G  P RI+  H++P+CL S +VRVTLDMAGIILTAAGLGFLGLG
Sbjct: 193 TMTFRNSDFIAAVKLMGASPFRIVLKHVMPLCLSSLIVRVTLDMAGIILTAAGLGFLGLG 252

Query: 243 AQPPMSEWGAMISTGRQYIFDQWWVAAVPGVAILLGSLAFNLVGDGLRDVLDPK 296
           AQPP+ EWGAMI++GR++I DQWWVAA+PG+AIL+ SL FNL+GDGLRD LDPK
Sbjct: 253 AQPPLPEWGAMIASGRRFILDQWWVAAMPGIAILIVSLGFNLLGDGLRDALDPK 306