Pairwise Alignments

Query, 1052 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1021 a.a., ACR family transporter from Pseudomonas simiae WCS417

 Score =  842 bits (2176), Expect = 0.0
 Identities = 452/1032 (43%), Positives = 634/1032 (61%), Gaps = 23/1032 (2%)

Query: 15   FNLSKWALDHAPLTRYLMVVLMVLGAFAYFQLGQDEDPPFTFRAMVVKTYWPGATAQQVA 74
            FNLS WAL H     YLM V +++G F+Y  LG++EDP FT + MV++T WPGAT ++  
Sbjct: 5    FNLSDWALKHQSFVWYLMFVALLMGVFSYMNLGREEDPSFTIKTMVIQTRWPGATQEETL 64

Query: 75   EQVTDKLERTLQEAPYADKIRSYSKPGESQIIFNIKDSSKSTEVANVWYTVRKKIGDMRA 134
            +QVTD++E+ L+E    D ++SY++PGES +   +KD++ +  +  +WY VRKKI D+R 
Sbjct: 65   KQVTDRIEKKLEELDALDYVKSYTRPGESTVFVFLKDTTSAKAIPEIWYQVRKKIDDIRG 124

Query: 135  TLPAGVQGPFFNDDFGDVYGVIYALESEGFSYAELKTLADDVRQQLLRVKDVAKVDQFGV 194
            T P G+QGP FND+FGDV+G +YA   +G S  +L+   + VR ++  V  + KV+  G 
Sbjct: 125  TFPQGLQGPSFNDEFGDVFGSVYAFTGDGLSMRQLRDYVEQVRAEIRSVPGLGKVEMIGQ 184

Query: 195  QDEKVYIEISQKRLAQLGLDFNAVLQQLGSQNAVESAGSISSPQDVVQVRVAGQFTSVDQ 254
            QDE +Y+  S ++LA LG+D   V+Q L SQNAV  AG I +  + + VR +GQF S   
Sbjct: 185  QDEVIYLNFSTRKLAALGIDQRQVVQSLQSQNAVTPAGVIEAGPERISVRTSGQFASEKD 244

Query: 255  LRDMPIRGSSGSQIKLGDIADIHRGYVDPPAVKVHHQGKEVIALGVSMAKGGDIIALGKA 314
            L ++ +R  +    +L DIADI RGYVDP        GK  I L ++M KGG+I + GKA
Sbjct: 245  LANVNLR-LNDRFYRLADIADISRGYVDPARPMFRFNGKPAIGLAIAMQKGGNIQSFGKA 303

Query: 315  LKATTATIDKRLPAGVKLAQVQDQPVSVASSVNEFVGVLIEAVAIVLAVSIISLGLHKGG 374
            L      +   LP GV + +V DQ   V  +V  F   L EAV IVL VS ISLG     
Sbjct: 304  LHERMDELTADLPVGVGVHKVSDQAEVVEEAVGGFTSALFEAVIIVLVVSFISLG----- 358

Query: 375  RFGWYIDMRPGLVVAITIPLVLAVTFLAMNYFGIGLHKISLGSLIIALGLLVDDAIIAVE 434
                   MR GLVVA +IPLVLA+ F+ M Y GI + ++SLG+LIIALGLLVDDA+I VE
Sbjct: 359  -------MRAGLVVACSIPLVLALVFVFMEYSGITMQRVSLGALIIALGLLVDDAMITVE 411

Query: 435  MMVRKMEEGYDKARAATYAYDVTAKPMLTGTLITAAGFLPIGLAKSVTGEYTFAIFAVTV 494
            MM+ ++E+G  K +AATYAY  TA PMLTGTL+T AGF+PIGL  S  GEYTF +FAV  
Sbjct: 412  MMITRLEKGETKEQAATYAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIA 471

Query: 495  IALVLSWIVSVYFVPYLGTLLLKVKAHDPDAPPHEMFDSAFYNAFRRAVNWCVEHRWATI 554
            +A+++SW+V+V F P +G  +L       +  PH         AF   + W + +RW  I
Sbjct: 472  VAMLVSWVVAVLFAPVIGVHILSA-----NVKPHNAEPGRIGRAFNGGMLWAMRNRWWAI 526

Query: 555  GATVLIFALGIVGMGKVQQQFFPDSSRPEILVDIWFPEGTSFAANEEVAKRVEKRFMEEA 614
            G TV +F   +  M  VQ QFFP S RPE+LVD+  P+  S     +   R+E    ++ 
Sbjct: 527  GITVALFVASVFSMQFVQNQFFPSSDRPELLVDLNLPQNASINETRKAVDRLEAIIKDDP 586

Query: 615  GVSTVSTWIGSGVPRFYLPLDQVFPQTNVSQLIVLAKDLKVRETLRLKLPQLLAQEFPEV 674
             ++  ST+IG G  RFYLPLDQ       +QL++++K L+ R  L  +L + L  +F  +
Sbjct: 587  DIARWSTYIGQGAIRFYLPLDQQLENPYYAQLVIVSKGLEERGELIARLQKRLRDDFVGI 646

Query: 675  RGRVKLLPNGPPVAYPVQFRVIGPDPALLRGHADEVKAVLRDNPNMRGVNDNWNESVKVI 734
               V+ L  GPPV  P+Q+RV G D   +R HA E+  +L  N ++  +  +WNE  KV+
Sbjct: 647  GSYVQPLEMGPPVGRPIQYRVSGKDTDQVRKHAIELATLLDKNSHLGEIIYDWNEPGKVL 706

Query: 735  RLEVDQAKARALGVTSQAIAQASKTMFSGTTVGQYRENDLLIDIVLRQAPDERQAISDIG 794
            R+++ Q KAR LG++S+ +AQ   ++ SG +V Q  ++  LI++V R    ER     + 
Sbjct: 707  RIDIAQDKARQLGLSSEDVAQLMNSVVSGASVTQVHDDIYLINVVGRAEDAERGTPETLQ 766

Query: 795  NAYIPTSSGRSIPLTQIAKPVFTWEPGVMWRENRDYAITVQGDVIEGLQGATVTTQLLPK 854
            N  I T +G SIPL   A   +  E  ++WR +R+  IT++  V + +Q   +  QL P+
Sbjct: 767  NLQIVTPNGTSIPLLAFATVRYELEQPLVWRRDRNPTITIKASVRDEMQPTDLVKQLKPE 826

Query: 855  LRELEAGWAAAGQGGYRVEVAGAAEESSKGSASIVAGVPIMLFLVFTLLMLQLHSFSRSL 914
            + +  AG       GY+V   G  EES K    I   VP+MLFL+ T LM+QLHS  +  
Sbjct: 827  IDKFSAGLPV----GYKVATGGTVEESGKAQGPIAKVVPLMLFLMATFLMIQLHSVQKMF 882

Query: 915  LVFITGPMGIAGVAGALLVLNRPFGFVALLGVIALMGMIQRNAVILIDQIEIDRAAGVPA 974
            LV    P+G+ GV  AL+    P GFVA+LG++AL+G+I RN+VIL+ QI     AG   
Sbjct: 883  LVASVAPLGLIGVVLALIPTGTPMGFVAILGILALIGIIIRNSVILVTQIHEYEVAGYTP 942

Query: 975  WDAIVESAVRRLRPIVLTAAAAVLAMIPLSRSVFWGPMAVAIMGGLIVATVLTLLALPAM 1034
            WDA+VE+   R RPI+LTAAAA L MIP++R VFWGPMA A++GG+I+AT+LTLL LPA+
Sbjct: 943  WDAVVEATEHRRRPILLTAAAASLGMIPIAREVFWGPMAYAMIGGIIIATLLTLLFLPAL 1002

Query: 1035 YAAAFRVKREPK 1046
            Y A +++ REPK
Sbjct: 1003 YVAWYKI-REPK 1013