Pairwise Alignments

Query, 399 a.a., Integrase from Variovorax sp. SCN45

Subject, 404 a.a., integrase from Pseudomonas simiae WCS417

 Score = 77.4 bits (189), Expect = 7e-19
 Identities = 85/334 (25%), Positives = 149/334 (44%), Gaps = 44/334 (13%)

Query: 30  GFLCKVTPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAEVRRGGDPSA 89
           G    V P GRK ++L+++  AG RR+  LG + E+++++AR  A    +++  G DP A
Sbjct: 23  GLRLVVKPTGRKSWLLRFQL-AGRRREMGLGSFPEVSLKKARQAASAKRSQLSDGIDPLA 81

Query: 90  AK----AAARSAPTVKE--------LCTKFMEDYSKQRNKPSTQRGYQAVIDRCIVPMLG 137
           A+    AA R A  V E        L T++ + +    ++   ++G+   ++      +G
Sbjct: 82  ARDLERAAQREAERVSEAKKLKFETLATEYRDAHGAMWSE-KWRKGWLRKLELYAFAHIG 140

Query: 138 RLKVQDVKRPDVATAMKKM-AHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHVPMY 196
           +L  +D+  P+V   ++ + A K   A+     + ++ + A+    R +G NP R     
Sbjct: 141 KLSAEDIGTPEVLKVLQPIWATKTRTADEVRGQIEQVLDAAKARNLR-EGENPARW---- 195

Query: 197 PNGKATHLISDEDMGKLFRRLEHIEA---EGLENYVIPL---------AIRLQFEFAGRR 244
             G   +L+S  +  K  R+ EH EA   + + + +I L         A +L    + R 
Sbjct: 196 -RGHLDNLLSRAEKKKA-RKREHFEALRWQDVPDLMIKLRANSTPPSWAAQLLIMTSARA 253

Query: 245 SEIVTLRWDWVDLDNRRVVWPDSKTG---GMSKPMSEEAYRLLSTAPRQEGTPYVLPSPS 301
             +   RWD  DL+      P  +         P++EE   L+ + PR EG+ ++ P   
Sbjct: 254 HMVRFARWDEFDLEAGTWSLPGERMKMRVAFVIPLAEEVVNLVKSIPRDEGSAFLFPG-- 311

Query: 302 HPGKHLTTGEYYGGWSRA-LKAAGATHVGTHGIR 334
             GK   TG  +    R  L   G  H+  HG R
Sbjct: 312 -QGK---TGVMHANAVRTLLHGIGYEHITRHGFR 341