Pairwise Alignments

Query, 399 a.a., Integrase from Variovorax sp. SCN45

Subject, 394 a.a., integrase from Pseudomonas simiae WCS417

 Score = 53.5 bits (127), Expect = 1e-11
 Identities = 77/357 (21%), Positives = 144/357 (40%), Gaps = 27/357 (7%)

Query: 4   LKLTKSAVDAAQPQAQAVELRDTLVPGFLCKVTPAGRKVFMLQYRTNAGERRKPALGLYG 63
           + LT +A   A+P+     + D+L  G    V P+G K +  ++ T  G++ + ++G Y 
Sbjct: 1   MALTDTAAKQAKPRENGYTIPDSL--GLSLYVAPSGVKSWHFRF-TWLGKQVRISIGTYP 57

Query: 64  ELTVEQARSLAQEWLAEVRRGGDP------SAAKAAARSAPTVKELCTKFMEDYSKQRNK 117
           E  +++AR+   E   ++  G DP        A   A    T + +  +++  + K    
Sbjct: 58  ETGLKEARARRDEAREDIANGVDPRDSRREKKAGMIAAGGQTFRRVYDEWLA-FRKGSIS 116

Query: 118 PSTQRGYQAVIDRCIVPMLGRLKVQDVKRPDVATAMKKMAHK--PAEANRAFSVMRKMFN 175
           P T R     +   ++P LG  ++  +KR DV   ++++  +   A A +    M ++F+
Sbjct: 117 PGTYRVISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVFS 176

Query: 176 LAEVWGHRPDGTNPCRHVPMYPNG--KATHLISDEDMGKLFRRLEHIEAEGLENYVIPLA 233
            A   G          H      G  K    +   +M ++   +    A G +   +  A
Sbjct: 177 YAIATGVIEANPTAEMHAVTEKMGQHKPHPFLPFSEMPRIMAAIRDC-ASGQQ---LKAA 232

Query: 234 IRLQFEFAGRRSEIVTLRWDWVDLDNRRVVWPDSK---TGGMSKPMSEEAYRLL-STAPR 289
           + L    A R  E+    W  +DLD      P +K       + P+S +A  +L S  P 
Sbjct: 233 LMLMIYTASRPGEVRHAEWSEIDLDAAIWTTPAAKMKMRRDHAVPLSTQAIAILESMLPI 292

Query: 290 QEGTPYVLPSPSHPGKHLTTGEYYGGWSRALKAAGATHV-GTHGIRHRSATDIANSG 345
                YV  + +     + T       +  + + G T +   HG RH  +T++   G
Sbjct: 293 TGDKRYVFINRNSTTAPIGTNYA----NNVMDSCGLTGIQSPHGFRHLFSTEMNGRG 345