Pairwise Alignments

Query, 342 a.a., Transcriptional regulator, AraC family from Variovorax sp. SCN45

Subject, 326 a.a., putative transcriptional regulator, AraC family from Pseudomonas putida KT2440

 Score =  103 bits (257), Expect = 6e-27
 Identities = 88/303 (29%), Positives = 130/303 (42%), Gaps = 6/303 (1%)

Query: 39  GISESLLELKDSRVTVEQFNALFIAVKDSLNDECLGYLHERPMRPGSFALMVRSAFTAHS 98
           G+  + L+  D+R   +    L+    +   +E +G    R +RP SF ++  +  ++ +
Sbjct: 6   GLDFAALDDPDARFPQDSMTRLWQLAVELSGNEAIGLNMARVVRPASFHVVGYALMSSRT 65

Query: 99  LSCALRRLSESFALLQD--DVTLVPVTEGALGGFALEMRGGPGAHAEFLHAHLLRVFWRL 156
           L+    RL     ++ +  D++ V   EG      L + G             L     L
Sbjct: 66  LAEGFERLVRYQRIIAESSDLSFVLGPEGY--SLILTVHGDHLPPTRHSAEASLACALAL 123

Query: 157 LLWLHGGRLVPQRFDFNFALPLHAMSYGRIFSGTLCFGQPRTAAWFDADAFKQPVRRDRD 216
             WL G  + P+R       P +   Y   F   L FG P  A  F+    + P+    +
Sbjct: 124 CKWLSGRPVQPRRVLVQGPQPKNVEPYKVAFHSPLVFGAPHDALVFERADMEAPLPTANE 183

Query: 217 ALQSFLRATPGNVVGPYLNERSASARVRMVLQRASPEW-PDLVVTAQRLHLSVSALQRHL 275
           A+        G  +  + +E   S RVR VL R  P+  P     AQ LHLS   LQR L
Sbjct: 184 AMAVLHDRFAGEYLARF-SESRVSHRVRQVLCRILPQGEPKRETLAQALHLSQRTLQRRL 242

Query: 276 ASEGTSFQALKDQLRRDMAIVRLTSSEASLVAIAADLGFTDSTAFQRAFKVWTGSAPGAY 335
             EGTSFQ L D  RR++A   L     +L+  A  LGF D + F RAF+ W  + P  Y
Sbjct: 243 QEEGTSFQTLLDDTRRELAEQYLAQPGMTLLETAYLLGFADPSNFYRAFRRWFDATPSEY 302

Query: 336 RAR 338
           RAR
Sbjct: 303 RAR 305