Pairwise Alignments

Query, 257 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

Subject, 256 a.a., Putative aliphatic sulfonates transport permease protein SsuC from Xanthobacter sp. DMC5

 Score =  137 bits (346), Expect = 2e-37
 Identities = 85/255 (33%), Positives = 141/255 (55%), Gaps = 10/255 (3%)

Query: 3   RKLLLSPALRPFLLILMLLVLWDLAIRLFKIPAYLIPPPWEVVKQLVAEWPHLLA--ESW 60
           R  LL       L  L LL LW+ A R+  + A   PPP  +V    A    L+A  E W
Sbjct: 4   RSGLLGERFIGLLTPLALLGLWEAAARMGLVDARFFPPPSSIVHTFGA----LVASGELW 59

Query: 61  KTTLATLGGFGLTILIG-IP---IAMVIAYSRVVESYVYPLLVFSQSIPKVAIAPLFVVW 116
              LA+L    L +L+G +P   + + +  S+ + + + PL+  +  IPK AI PL ++ 
Sbjct: 60  TNLLASLRRLFLGMLLGGVPALFLGLAMGISKPLRAAIDPLISATYPIPKSAILPLVLLI 119

Query: 117 FGFGIFPKVISAFLLGFFPVVVSTVMGFKSVEPDMLDLSRSMGASRLQTFFKISLPQALP 176
           FG G   KV+   L  F+P++++TVMG  +++   LD+  +  ASR Q F  I+LP ALP
Sbjct: 120 FGLGEMSKVVMVALGAFYPILINTVMGVANIDKIYLDVGHNYRASRWQVFRTIALPGALP 179

Query: 177 QIFSGLKVSVTLAVVGAVVGEFVGSNSGIGYVLQVANGNFDLPLMFAALVVLSSIGVILF 236
            I +G+K+++ + ++   + E V ++ GIGY++  A     +  M+  L+V++ +G +  
Sbjct: 180 SIMAGVKLAMGMGLILIAISEMVAASDGIGYMIWNAWQVLTVDTMYVGLLVIALLGFVFS 239

Query: 237 VAVDLVERVMIPWHA 251
           V +D +ER++IPW A
Sbjct: 240 VILDEIERMLIPWKA 254