Pairwise Alignments

Query, 333 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

Subject, 330 a.a., ABC transporter, substrate binding protein (nitrate/sulfonate/taurine/bicarbonate) from Agrobacterium fabrum C58

 Score = 85.1 bits (209), Expect = 2e-21
 Identities = 76/270 (28%), Positives = 123/270 (45%), Gaps = 16/270 (5%)

Query: 3   KLLPSLLAAAALATFAIAPAQAQGDKPKDKVTLMLNWYLYSEHAPFFLGKEKGFYADEGI 62
           KL   LLA A++ T       A G +  DK+TL L W   ++ A +++ K+KGFY  EG+
Sbjct: 4   KLASILLAGASVLT-------AFGAQATDKITLQLKWVTQAQFAGYYVAKDKGFYEAEGL 56

Query: 63  DLDIQEGRGSAVTAQAVAAKSATFGYIDVTTMIKAAAKGAPLKSTGVLFQVSPMSVMGFS 122
           D+DI+ G      AQ +A   A      + + +    KG PL +    F+ S M +    
Sbjct: 57  DVDIKPGGPDIAPAQVLAGGGADVIVDWMPSALATREKGVPLVNIAQPFKSSGMMLTCLK 116

Query: 123 EKNIKTPKDIIGKTVAV--TPGDSMSQMWPLFLKVNDIKPDQVKIVSGDGQTKLNAVTNG 180
           E  I  P+D  GKT+ V     +     W   LK+          V   G   ++ +   
Sbjct: 117 ETGITKPEDFKGKTLGVWFFGNEYPFLSWMAHLKIPTTGGADGVTVLKQG-FNVDPLLQK 175

Query: 181 QADLLLGYVMDQAIKLQDATGKP--VTPIRFADSGVNQISSGIITNKNLLTE---NPDLV 235
           QA  +     ++  ++ DA  KP  +   ++   GV  +  G+   ++ L +     DLV
Sbjct: 176 QAACISTMTYNEYWQVIDAGIKPEELVTFKYEAEGVATLEDGLYVLEDKLKDAKFREDLV 235

Query: 236 KRFMRASTKAAEAAEKSPEAAVDAMLKANA 265
           K F+RAS K  + AE+ P+ A   +L+ +A
Sbjct: 236 K-FVRASMKGWKWAEEHPDDAAGIVLENDA 264