Pairwise Alignments

Query, 496 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Variovorax sp. SCN45

Subject, 473 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas simiae WCS417

 Score =  270 bits (690), Expect = 8e-77
 Identities = 181/478 (37%), Positives = 249/478 (52%), Gaps = 88/478 (18%)

Query: 15  GSIALMLGVHQIARGATILAVRVWPAADYTRVTIESDARLNSQQLVVGSPPRLAVDIEGI 74
           G +   + V+ +A  + + +VR+W A D TR+  +    +      + +P RL +DI G 
Sbjct: 11  GVLLAAMTVNALA-ASQVKSVRLWRAPDNTRLVFDLSGPVQHSVFTLTAPDRLVIDINGA 69

Query: 75  DLNPELRELVGKIKPGDPYINGLRVGQNAPKVVRIVFDLKQAVVPQVFSLAPVAAYKHRL 134
            L   L     K+   +  I  +R  Q  P  +R+V DLK+ V P+ FSLAP A Y +RL
Sbjct: 70  TLAAPL-----KVSTANTPITAMRSAQRTPTDLRVVIDLKKVVTPKSFSLAPNAQYGNRL 124

Query: 135 VLDLYPEQAVDPMEALIAERLRDAPRTPQQGGNPAVAGIVPSTPTAPAGDPLGDLMAQQS 194
           V+DL+   A             DA   P     P+VA  VP+ P  P+            
Sbjct: 125 VVDLFDNAA-------------DA--NPPPAPPPSVA-TVPAVPVNPS------------ 156

Query: 195 MRPGPQTPPPPVVAGIDRPTAPVIVAPPPPVVGTAPVRPIAPSPPPPVAAPRGGPATASR 254
            +P  + PPPP                                           PA A +
Sbjct: 157 -QPQVKLPPPP-------------------------------------------PAPAGK 172

Query: 255 TDRIIIVALDPGHGGEDPGAIGPNGTREKDIVLQVAHRLRERINAGSVNGSPMRAFLTRD 314
            D  IIV +D GHGGEDPGA G  G  EKD+VL +A  L+ +INA  + G   RA LTR 
Sbjct: 173 RD--IIVVIDAGHGGEDPGASGSRGQHEKDVVLAIARELQRQINA--MKG--YRAELTRT 226

Query: 315 ADFFVPLGVRVQKARRVQADLFVSIHADAFTTPAARGASVFALSQSGASSSAARWMANKE 374
            D+F+PL  R + AR+  ADLFVSIHADA  + AA GASVFALS  GA+S  ARW+A+ E
Sbjct: 227 GDYFIPLRGRTEIARKKGADLFVSIHADAAPSAAAFGASVFALSDRGATSETARWLADSE 286

Query: 375 NEADKVGG---VNVGGHEAQVQRALLDMSTTAQINDSLKLGGAMLGEIKNIGARLHKGQV 431
           N +D +GG   V++   +  +   LLD+S TA +  SL +G  +L  I  +   LHK +V
Sbjct: 287 NRSDLIGGAGNVSLDDKDKMLAGVLLDLSMTASLTSSLNVGQKVLSNIGRV-TPLHKQRV 345

Query: 432 EQAGFAVLKAPDIPSVLVETAFISNPEEEANLRRVDYQESLADALMRGIQRYFAQNPP 489
           EQAGF VLK+PDIPS+LVET FISN  E + L    +Q++LA ++  G++++F QNPP
Sbjct: 346 EQAGFMVLKSPDIPSILVETGFISNSNEASKLATGSHQQALARSISAGVRQFFQQNPP 403