Pairwise Alignments

Query, 375 a.a., DNA double-strand break repair protein Mre11 from Variovorax sp. SCN45

Subject, 413 a.a., exonuclease SbcD from Pseudomonas simiae WCS417

 Score = 52.8 bits (125), Expect = 2e-11
 Identities = 102/417 (24%), Positives = 159/417 (38%), Gaps = 72/417 (17%)

Query: 4   LLHTADWQIGRVFSQFEPDDAAALFEARFKVVERLAAIATERTVDAVLVAGDVFDLQTVS 63
           L HT+DW +G+     E D   A F      +E L         D +L+AGD+FD     
Sbjct: 3   LFHTSDWHLGQNLHGQERDFEHACF------LEWLLGQLKTHLPDVLLIAGDIFDTVNPP 56

Query: 64  DKTIRRMFNAM-----QGFAGPWLLIPGNHDS-----------------ALGESVWSRAA 101
            K   R+++ +     Q      ++I GNHDS                 ALG  +W    
Sbjct: 57  LKAQERLYDFIISAHEQNPKLTIVMIAGNHDSGSRIELPAPLMRRLRTHALGRVLWLDDG 116

Query: 102 RLGAVPPNVVCCLEPVPRTVAGKFT--------LLPAPLTQRHT-------YGDLTDWFA 146
           +L A        L P+P    GK          L PA +T  H         G + +W  
Sbjct: 117 QLDAER-----LLIPLP-DAKGKIAAWCLALPFLRPAEVTGAHLGDDYLRGIGQVHEWLI 170

Query: 147 SATG--EEEGLPRIGLAHG-CVQGILSEDIDSANPIAADRAAQARL-----DYLALGDWH 198
           +A     ++G   I ++H     G +SED + +  I    A  A L      Y+ALG  H
Sbjct: 171 AAANAKRKKGQALIAISHAHMAGGSVSEDSERSLIIGNAEALPASLFDRSVAYVALGHLH 230

Query: 199 GTRQT--DERTWYAGTPETDRF-RANDSGQALLVTIAGAGALPQVEPV---RTGQYAWQQ 252
             ++   +ER  Y+G+P    F       Q L VT  G   L  VEP+   R+      +
Sbjct: 231 KPQKVNGEERIRYSGSPIPLSFSEIGYKHQILDVTFQGQ-CLVSVEPLLIPRSVDLQRLE 289

Query: 253 WEPRLSVASDIDEL--VEKLDTVGANDVLQLRA---QGSCDLGGHNRLDAALDAARARAR 307
             P   +   + EL  ++ L     +  L++R    +   DL    ++++AL     R  
Sbjct: 290 AAPLADILKALAELPDIDLLAETQRHPWLEVRVRLDEPQPDL--RQQIESALQGKAVRLV 347

Query: 308 ALVWDGEALRLEPTEEDIQALHADGFVGEALQDLRAQQDGAGAELARDALLTLARIL 364
            +  +         E D + +  D    + L   RA QD  G+++    L   A +L
Sbjct: 348 RIAAEYAGTGSREDEGDDRLIDLDQLTPQELFS-RAWQDSYGSDVDEQTLKDFAVLL 403