Pairwise Alignments

Query, 411 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 406 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  254 bits (648), Expect = 4e-72
 Identities = 159/403 (39%), Positives = 228/403 (56%), Gaps = 6/403 (1%)

Query: 12  ERAARDSYGRLLAILSARTHDIAASEDALADAFARALERWPADGIPDRPDAWLLSVARHR 71
           E   R    R+LA L     D   +E+A+ DAF  A+ERW  DGIP  P AWL+SV R +
Sbjct: 6   EAVYRQESRRILATLIRLLGDFDLAEEAMHDAFFIAVERWQRDGIPANPRAWLVSVGRFK 65

Query: 72  KLDAWRHTRVQDEATQA--LMLLAGEVDGSDADGAAVPDERLRLLFVCAHPAIDAPARAP 129
            +DA R  RV+ + +QA   MLL G+     ++   + D+RLRL+F C HPA+ A A+ P
Sbjct: 66  AIDALRR-RVRFDRSQADLSMLLEGQAQ-DPSEEELLADDRLRLIFTCCHPALSADAQVP 123

Query: 130 LMLQTVLGLDAARMASAFLTSPSTLGQRLVRAKARIRAAGIPFEYPQARELPQRLQDVLD 189
           L L+ V  L   ++A AFL SP+T+ QR+VRAKA+IR AGIP++ P+  ELP+RL+ VL 
Sbjct: 124 LTLREVCDLTTEQIARAFLQSPATIAQRIVRAKAKIRDAGIPYQVPELSELPERLESVLR 183

Query: 190 GIYAAYGTGWDDVDGADAIPRNLTAEAIDLGRILCNLMPREPEPLGLLALMLFCEARTAA 249
            IY  +  G+    G   + + L+ EAI L R+L  L+P +PE +GLLALML   +R  A
Sbjct: 184 VIYLVFNEGYSASSGETLLQQALSDEAIRLARLLVQLLP-DPEAVGLLALMLLQASRQRA 242

Query: 250 RRNDAGAYVPLDQQDITRWNHQLLAEAEHHLRHASSMQALGAYQLEAAIQSAHCERRAGA 309
           R +  G  V L+QQD + W+ Q +AE    +R A   +A GAY ++AAI + H E     
Sbjct: 243 RIDGQGDLVVLEQQDRSLWDRQFIAEGCALVRQALQSRAFGAYTVQAAIAAVHAEAATAE 302

Query: 310 SVPAETLVSLYEGLLALRHSIGAQVSLACALANARGPETGLQALDAIPA-ADVTNYQPFW 368
                 +V LY+ L     S    ++ A ALA   GPE GL+ ++ I A  ++ +Y    
Sbjct: 303 ETDWGEIVGLYDVLQRYWPSAVVALNRAVALAKRDGPEAGLREVEGILARGELLDYHLAH 362

Query: 369 AARAHLLAAGGARAASRQAYDRAIGLSTSAVVRAYLNAMSQRL 411
           AARA L    G    +R A+ +A+ L+  A  R ++    Q +
Sbjct: 363 AARAELHCQLGQVQEARAAWQQALALTRQAPERRHIERRLQAI 405