Pairwise Alignments

Query, 398 a.a., Broad-specificity amino acid ABC transporter, substrate-binding protein from Variovorax sp. SCN45

Subject, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

 Score =  114 bits (284), Expect = 6e-30
 Identities = 109/400 (27%), Positives = 168/400 (42%), Gaps = 15/400 (3%)

Query: 4   KLGLIATAVGILAMSAGAVQAQEKVKIGFVTDLSSLYADLEGKGGATAIQMAIDDFGGKA 63
           K GL   A+G L + A    A + +    +  +S  +A   GK      ++AI +   + 
Sbjct: 8   KAGLALGALGSLPLGAHRAFADQPLTFYGLKSMSGAFASY-GKYADMGSRLAIAEHP-QL 65

Query: 64  LGQPIELLVADHQNKADIAASKAREWIDTAGVTMVFGGTNSGVALATAKVAEEKKRVYFN 123
           LG P++  V D +  A  A  K +E I   G     G T S  ALA +K   +   V F 
Sbjct: 66  LGHPLKYKVIDTEGNAGKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKEIHKAGGV-FM 124

Query: 124 NGAGSSVLTNEQCSPYTVHYAYDTVALAKGTGAAVVDR--GGKSWFFLTADYAFGHALEA 181
              G+  +T + C+  T  ++  T    + T   +  +    K W+ +T  Y FG AL  
Sbjct: 125 TPVGADEITGKDCNASTFRWSVPTYGAIRETLVPMSRQLPQAKRWYTITPQYVFGDALLD 184

Query: 182 DTTKVVKEKGGTVVGAVRHPLNASDFSSFLLQAQNSKAQILGLANAGGDTINSIKAAKEF 241
           +  KV  E G   +G   H L   +FS +L  A  +K  +L L N G    N+++ A  F
Sbjct: 185 NARKVFAELGVEHIGNSYHSLQEQEFSGYLTNAIAAKPDVLVLLNFGSQASNALRQAVNF 244

Query: 242 GINKTMKTAGLLVF---LSDIHSLGLKNTEGLLHTTSWYWDLNDESRKFANRFFEKTKRM 298
           GI   MK   L+V+   L     LG    EG+     ++  ++    K       K   +
Sbjct: 245 GIKDRMKV--LMVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNKLLVAATRKAYGI 302

Query: 299 -PTDVQAADYSATMTYLKAVAAAKTTDSDKVMAQLKSMKIDDFYGKGQIR-ADGSFIHDM 356
            P    AADY  T   L+A+  A + D   V A L+ M+     G+  IR  D   + D 
Sbjct: 303 NPNYPLAADYIGTKVMLEAIVKAGSLDGAAVSAALQGMRFQGPTGEELIRPGDHQVLKDY 362

Query: 357 YLVEVKSPAESKKPWDYLKVLKTLPGDQVFTTKAETKCAL 396
           YL+  K   + +   D  +V+ +    + F     T CAL
Sbjct: 363 YLLRGKPQGQMRDEDDLAEVISS---GRSFVEVDHTGCAL 399