Pairwise Alignments

Query, 520 a.a., Multidrug efflux system EmrAB-OMF, inner-membrane proton/drug antiporter EmrB (MFS type) from Variovorax sp. SCN45

Subject, 511 a.a., multidrug efflux transport system - permease subunit from Pseudomonas putida KT2440

 Score =  478 bits (1230), Expect = e-139
 Identities = 239/496 (48%), Positives = 337/496 (67%), Gaps = 3/496 (0%)

Query: 23  TVALSAATFMNVLDSSIANVSLPAISGDLGVSTTQGTWVITSFAVANAIAVPLTGFMTQR 82
           T+ LS ATFM VLD++IANV+LP ISG+LGVS  QGTWVITSFAV+NAIA+PLTG++++R
Sbjct: 18  TIGLSLATFMQVLDTTIANVALPTISGNLGVSYEQGTWVITSFAVSNAIALPLTGWLSRR 77

Query: 83  FGQVRLFMASVILFMVASLLCGLAPNMTTLILFRALQGFVAGPMIPLSQTLLLSSYPRAK 142
           FG+V+LF+ + +LF++AS LCG+A +M  L+ FR LQG VAGP+ P++QTLL++ YP AK
Sbjct: 78  FGEVKLFIWATLLFVLASFLCGIAQSMPELVGFRVLQGVVAGPLYPMTQTLLIAVYPPAK 137

Query: 143 AGLAMAMWSMTTLVAPVMGPLLGGWITDNISWPWIFYINIPVGIVAASITWALYHKRESV 202
            G+A+A+ +M T+VAP+ GP+LGGWITD+ SWPWIF+IN+P+G+ AA++       R  V
Sbjct: 138 RGMALALLAMVTVVAPIAGPILGGWITDSYSWPWIFFINVPIGLFAAAVVRQQMRTRPVV 197

Query: 203 THKVPIDAIGLALLVLFVGSMQLMLDKGKELDWFHSPQIVTMAVVAVVGFAFFLVWELTD 262
           T + P+D IGL  L++ VG++Q++LDKG +LDWF S  I+  ++++VV  A F++WELTD
Sbjct: 198 TSRQPMDYIGLLTLIIGVGALQVVLDKGNDLDWFESSFIIVGSLISVVFLAVFVIWELTD 257

Query: 263 KHPVVDLSLFKRRNFWSGAVATAVAYGLFFGNVVLLPLWLQQWMGYTATQAGMIMAPVGM 322
           +HPVV+L LF  RNF  G +     Y  FFG  ++LP WLQ  MGYTAT AG+ +AP+G+
Sbjct: 258 RHPVVNLRLFVHRNFRIGTIVLVGGYAGFFGINLILPQWLQTQMGYTATWAGLAVAPIGL 317

Query: 323 LAIFFSPIVGLTVSKIDPRRYATFSFLVFALVLWMRSNFNTQADFVTIIIPTVIQGIAMA 382
           L +  SP VG    + D R  A  +FL      +MR+ F ++ DF  + +  +  GI +A
Sbjct: 318 LPVIMSPFVGKYAHRFDLRVLAGLAFLAIGTSCYMRAGFTSEVDFQHVALVQLFMGIGVA 377

Query: 383 FFFIPLVTITLSGLTPDRIPAASGLSNFLRITAGAMGTSLTTTLWDNRATLHHTQLSETI 442
            FF+P ++I LS L P +I   SGL+ FLR   G+   SLTT +W  RA  HH  LSE I
Sbjct: 378 LFFMPTLSILLSDLPPHQIADGSGLATFLRTLGGSFAASLTTWIWIRRADQHHAYLSEHI 437

Query: 443 NQGNNAATSAMAGLGSSGFSTEQVLGQMNRIVDQQAYMLATNDIFYASAILFLLLIPLVW 502
           +Q +      +  LG    ++ Q   Q+ +I++ QAYM++T D F   + +F  LI LVW
Sbjct: 438 SQFDPTTRHTLEQLGG---ASPQSYAQLEQILNGQAYMMSTVDYFTLMSWVFAGLILLVW 494

Query: 503 LARPQKGGAGGDAAAG 518
            A+P      G A+AG
Sbjct: 495 FAKPPFTAKAGPASAG 510