Pairwise Alignments

Query, 586 a.a., Efflux ABC transporter, permease/ATP-binding protein from Variovorax sp. SCN45

Subject, 602 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas putida KT2440

 Score =  299 bits (765), Expect = 2e-85
 Identities = 199/584 (34%), Positives = 313/584 (53%), Gaps = 25/584 (4%)

Query: 12  LSPFLRPYRVQIVLAGVFLVMAAVTTLAFPIALRSLIDGGFVNPDKGA--QTMALRDHFG 69
           L  +++PY    +L+ V  V+ A T       L+  +DG   NP+         LRD   
Sbjct: 20  LLSYVKPYVGIFLLSIVGFVIFASTQPMLAGILKYFVDG-LSNPEAVLFPNVPYLRD-LQ 77

Query: 70  ALFAVAVAL-------GLFSAARFYTVSWLGERVTADIRNAVYGRVLKQSPAFFETTQTG 122
            L AV + +       GL S    Y ++ +   +  D+R A++ ++L     +F+   +G
Sbjct: 78  LLQAVPLLIILIAAWQGLGSFLGNYFLAKVSLSLVHDLRVALFNKLLVLPNRYFDNHNSG 137

Query: 123 EVLSRLTADTTLVQTVVGSSLSMGLRNAVMGVGALAVLVWTNPYVMVQVLGILVLVVLPS 182
            ++SR+T + T+V      ++ + +R  +  V   A L+W N ++ + ++ IL ++ +  
Sbjct: 138 HLISRITFNVTMVTGAATDAIKVVIREGLTVVFLFAYLLWMNWHLTLVMVAILPVIAVMV 197

Query: 183 MWFGRRVRKLSRASQDRVADSSAIAAEVLNAIPVVQSYTAEGREASRFNGSTENAFRTAV 242
               ++ RK S+  Q  + D + +A+E +    VV+S+  E  E  RF  ++++     +
Sbjct: 198 SIASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQQRFGQASQSNTDKQL 257

Query: 243 RRTKARSV---LVAFIIIATSAALLWGLYQGTQAVLRGDITAGHLGQTVVYVAILASATA 299
           R TK  S+   ++  +I +  AAL++ +       LRGD TAG L   +    +L     
Sbjct: 258 RMTKTGSLYTPMLQLVIYSAMAALMFLVL-----FLRGDSTAGDLVAYITAAGLLPKPIR 312

Query: 300 VLGEVYGDLLRAAGATERLMELLHAPSAIFSPANPAVTPVPAAGSAIRFDAVTFHYPSRP 359
            L EV   + +     E + E L     +    +            +    ++F YP   
Sbjct: 313 QLSEVSSTIQKGLAGAESIFEQLDEAPEV----DTGTVEKERVEGRLEVRNLSFTYPGTE 368

Query: 360 GTPALRDFSLDVAPGETVALVGSSGAGKSTVFQLLLRYYDPQSGRLILDGAPLASLALSD 419
               L D S    PG+ +ALVG SG+GKST+  L+ R+Y    G+++LDG  +    L +
Sbjct: 369 -REVLSDISFVAEPGQMIALVGRSGSGKSTLAALIPRFYHHDKGQILLDGVEIEHYRLRN 427

Query: 420 LRTRIGLVPQDAVIFSTSAFENIRYGR-PEATAEEVHAAARAAFAHDFLQALPEGYDTFL 478
           LR  +  V Q   +F+ +   NI YG    A   ++ AAA  A+A +F+  LP+G+DT +
Sbjct: 428 LRRHVSQVTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFDTEV 487

Query: 479 GERGVRLSGGQRQRIAIARAILKNPPLLLLDEATSALDAESERMVQAALESAMEGRTTLV 538
           GE GV LSGGQRQR+AIARA+LKN PLL+LDEATSALD ESER +QAAL+  M+GRTTLV
Sbjct: 488 GENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTLV 547

Query: 539 IAHRLATVQKADRIIVLDHGGIVEQGTHAALVAQGGVYARLAAL 582
           IAHRL+T++KAD+I+V+D G +VE+GTH  L+A  G YARL A+
Sbjct: 548 IAHRLSTIEKADQILVMDQGRLVERGTHTELLAANGHYARLHAM 591