Pairwise Alignments

Query, 417 a.a., NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) from Variovorax sp. SCN45

Subject, 593 a.a., NADH-quinone oxidoreductase subunit C/D from Pseudomonas putida KT2440

 Score =  305 bits (782), Expect = 2e-87
 Identities = 164/410 (40%), Positives = 234/410 (57%), Gaps = 29/410 (7%)

Query: 9   LNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESRTFIQSLPYMDRLDY 68
           LN GP HP+AHG  R+VL+LDGE I    P IG  HR  EK+AE +++   +PY DR+DY
Sbjct: 212 LNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTDRIDY 271

Query: 69  VSMMSNEHAYCLAIERMMGLEVPIRAQYIRVMFAEITRLLNHLLWLGAHGLDCGAMNMLI 128
           +  + N   Y LA+E++ G++VP +   IR+M AE  R+ +HLL+LG +  D GAM  + 
Sbjct: 272 LGGVMNNLPYVLAVEKLAGIKVPQKVDVIRIMLAEFFRITSHLLFLGTYIQDVGAMTPVF 331

Query: 129 YCFREREDLFDLYEAVSGARMHAAYFRPGGVYRDLPDAMPQYKVSKIKNAKAIEKLNENR 188
           + F +R+  + + EA++G R+H A++R GGV  DLP              +  +KL    
Sbjct: 332 FTFTDRQRAYTVIEAITGFRLHPAWYRIGGVAHDLP--------------RGWDKL---- 373

Query: 189 QGSMLDFVDDFCKRFPKMVDEYETLLTDNRIWKQRTVGIGVVTPERALNLGFTGPMLRGS 248
                  V DF +  PK +DEY      N I K RT+G+     + AL  G TG  LR +
Sbjct: 374 -------VKDFVEWLPKRLDEYTKAALQNSILKGRTIGVAAYNTKEALEWGTTGAGLRAT 426

Query: 249 GIEWDLRKKQPYDVYDRMQFDVPVGKTGDCYDRYLVRVEEMRQANRIIQQCSAWLRANP- 307
           G  +DLRK +PY  Y+  +F+VP+   GD YDR +VRVEEMRQ+ RII QC   LR  P 
Sbjct: 427 GCNFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVRVEEMRQSIRIIDQC---LRNMPE 483

Query: 308 GPVITDNHKVAAPARESMKANMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVS 367
           GP   D+     P +E    ++E LI HF   + G  +P  E++  +E  KG    YL S
Sbjct: 484 GPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTS 543

Query: 368 DGANKPYRLKIRAPGFPHLAALDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
           DG    YR +IR P +PHL  +  + +G M+AD +A +G++D V  ++DR
Sbjct: 544 DGGTMSYRTRIRTPSYPHLQQIPSVIKGSMVADLIAYLGSIDFVMADVDR 593