Pairwise Alignments

Query, 305 a.a., ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron) from Variovorax sp. SCN45

Subject, 306 a.a., spermidine/putrescine ABC transporter - inner membrane subunit from Pseudomonas putida KT2440

 Score =  150 bits (378), Expect = 5e-41
 Identities = 95/281 (33%), Positives = 166/281 (59%), Gaps = 28/281 (9%)

Query: 26  PFALVFLLFFLIPLALVAMVS-------------LWNFNEYELIPAVTLRNYLSLFEGCS 72
           PF  +FL FF++P  +V  +S             ++ + E ++   + L NY        
Sbjct: 25  PFIWLFL-FFMLPFFIVLKISFAEADVAIPPYTEIYTYVEDKIQLVLNLANY-------G 76

Query: 73  RLTDNGDLCVTLNTYLSTFKFCVLVWGITLLIGFSVAYFLAFHVRSSTMQTVLFVLCTVP 132
            LT++    + L+ YL + K       + LLIGF +AY +A + +  T QTVL +L  +P
Sbjct: 77  LLTEDE---LYLSAYLGSLKMAFFSTLLCLLIGFPMAYAIA-NAKKET-QTVLLLLIMMP 131

Query: 133 FWTSNVIRMISWVPLLGRNGLVNQALMGVGLANQPVEWLLFSDFSVVLAFVHLYTMFMIV 192
            WT+ +IR+ +W+ +L  NGL+N  L+  GL +QP++ +L ++ +V +  V+ Y  FMI+
Sbjct: 132 TWTAILIRVYAWMGILSNNGLLNGFLLWTGLIDQPLQ-ILNTNLAVYIGVVYSYLPFMIL 190

Query: 193 PIFNSMMRIDRSLLEAASDAGASGWQTLWNVVVPLSRTGILIGSIFVITIVMGDFVTIGV 252
           P+F ++++ D SLLEAASD G+S + + W + VPLS+ GI+ G + V   V+G+FV   +
Sbjct: 191 PLFANLVKHDPSLLEAASDLGSSTFNSFWKITVPLSKNGIIAGCMLVFIPVVGEFVIPEL 250

Query: 253 MGGQQIASIGKII-QVQTSYLQFPLAAANAMILLAVVLMII 292
           +GG +   IGK++ Q   +   +P+A+A A+++LA++++ I
Sbjct: 251 LGGPETLMIGKVLWQEFFNNRDWPVASALAVVMLAILIVPI 291