Pairwise Alignments

Query, 277 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 266 a.a., Amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

 Score = 65.5 bits (158), Expect = 1e-15
 Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 9/251 (3%)

Query: 3   IKRNFIRALVAAVAACTLGPAFAQDQESSLARVQRTHVLRVGAIAGAIPYFAKDPGTGKW 62
           IK+   R LV   A   +  A A   + ++ R      LRVG     +P F      G+ 
Sbjct: 2   IKKYLSRLLVGVTALVAVTAAQAGAIDDAVKR----GTLRVGMDPTYMP-FQMTNKRGEI 56

Query: 63  EGFGPDFGESLAKSLGAKVEYVETTWGNAVLDLQSNKIDAM-FGLAPSPQRAAMVNFADT 121
            GF  D  +++AKS+G K E V T +   +  L ++K D +  G+  + +R   +NF++ 
Sbjct: 57  IGFEVDILKAMAKSMGVKFEAVSTAYDGIIPALLTDKFDMIGSGMTLTQERNLRLNFSEP 116

Query: 122 LFENTYTVVCKKGVPQ--KSWEQLNTPETKIVVDIGSSHDQLAQRVLPKADVTRLENSGA 179
                 T++ +K +    KS++ LN  + ++   +G++ + ++++++ KA     +N   
Sbjct: 117 FIVVGQTLLIRKELAGEIKSYKDLNNEKYRLTSKLGTTGEMVSKKLISKAKYHGYDNEQE 176

Query: 180 ATMSLQAGRADCQVLVILLAEPLLAKRPGLGTMYIPQPVYTAPVSIGLRKDSDPGLQKAV 239
           A M +  G+AD  V         + K      +++ +P    P++ GL+K  D      +
Sbjct: 177 AVMDVVNGKADAFVYDAPYNVVAVDKAGAGKLLFLDEPFTYEPLAFGLKK-GDYDSINFI 235

Query: 240 NAWLAQERSKG 250
           N +L Q +  G
Sbjct: 236 NNFLHQIKHDG 246