Pairwise Alignments

Query, 1070 a.a., Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA from Variovorax sp. SCN45

Subject, 1045 a.a., efflux RND transporter permease subunit from Dickeya dadantii 3937

 Score =  652 bits (1681), Expect = 0.0
 Identities = 365/1060 (34%), Positives = 610/1060 (57%), Gaps = 33/1060 (3%)

Query: 1    MFERIIRFSIEQRWLILLAVLGMAALGIFSYQKLPIDAVPDITNVQVQINTAAPGYSPLE 60
            M   +IR+SI+ R+L+L+A L MA  G+ S QK P+DA+PD+++VQV I  + PG +P  
Sbjct: 1    MIAAVIRWSIKNRFLVLIATLLMAGWGVISLQKTPLDALPDLSDVQVIIRVSYPGKAPQV 60

Query: 61   TEQRVTYPIETVMAGLPGLQQTRSLSRYGLSQVTVIFKDGTDIYFARQLVNERIQSARES 120
             E +VTYP+ T M  +PG +  R  S +G + V V+F+DGTD Y+AR  V E +   + +
Sbjct: 61   VENQVTYPLTTTMLSVPGARTVRGFSMFGDAYVYVLFEDGTDPYWARSRVLEYLSQVQST 120

Query: 121  MPRGISPVIGPISTGLGEIYLWTVEAEEGARKADGKPYSSTDLREIQDWIIKPQLRNVAG 180
            +P      +GP +TG+G IY + +    G        ++  DLR IQDW++K +L+ V  
Sbjct: 121  LPTEAKASLGPDATGVGWIYEYALVDRSGR-------HNLADLRAIQDWLLKYELKTVPN 173

Query: 181  VTEINSIGGYAKEFQISPDPAKLLAHGLTMTDLVTALERNNANVGAGYIEKRGEQYLIRA 240
            V E+ SIGG  +++Q+  +P +L A  +T   ++ AL   N   G   IE    +Y++R 
Sbjct: 174  VAEVASIGGMVRQYQVVLNPERLRALNVTHQQVIDALRAANQESGGSVIELGEAEYMVRT 233

Query: 241  PGQVKSVEDIGNVILGNANGIPLRVQDVAEVGIGKELRTGAATDNGR-EVVLGTVFMLIG 299
             G +   ED  NV +G  +GIP+ +QDVA +  G E+R G A  NG  EV  G + M  G
Sbjct: 234  SGYLLKAEDFLNVAVGRRDGIPVLLQDVATLRQGPEMRRGIAELNGEGEVAGGVIVMRSG 293

Query: 300  ENSRTVSQAVDRKMQEINRTLPAGVKAVTVYDRTVLVDKAIATVKKNLFEGAVLVIAILF 359
            +N+    +AV  ++Q+I ++LPAGV+ VT YDR  L+++AI T+   L E  V+V  +  
Sbjct: 294  KNALETLRAVHARLQQIRQSLPAGVEIVTTYDRAPLIERAITTLSHKLLEEFVVVALVCS 353

Query: 360  LFLGNIRAALITALVIPLSMLFTFTGMVNQKVSANLMSLG--ALDFGIIIDGAVVIVENC 417
            LFL + R++L+  + +PL +L  F  M  Q ++AN+MSLG  A+  G ++D A+V++EN 
Sbjct: 354  LFLFHFRSSLVAIISLPLGILGAFIIMRYQGINANIMSLGGIAIAIGAMVDAAIVMIENM 413

Query: 418  VRRLAH-AQAHKGRPLTRSERFHEVFAASQEARRPLLFGQLIIMIVYLPIFALTGVEGKL 476
             + +      H  R    +  +     A+ E    L    LII + ++P+F+L   EG++
Sbjct: 414  HKVIEQWRHQHPDREPDNATWWQLATQAATEVGPALFCSLLIITLSFIPVFSLEAQEGRM 473

Query: 477  FHPMAFTVVIALLGAMILSITFIPAAVALFIGNKV-SEKENRLMVWAKRGYEPLLARVMG 535
            F P+AFT   A+  +  L IT +P  +  F+  ++  E+ N L  W    Y+P+L +V+ 
Sbjct: 474  FSPLAFTKTYAMAVSAGLGITLVPVLMGYFVRGRIPDEQANPLNRWLIALYQPVLRQVLR 533

Query: 536  AKPLVITTAVVAVLLSGLLATRLGTEFVPSLSEGDFAIQALRIPGTSLTQSVEMQKQLER 595
                 +  ++  ++L+     RLG+EF+P L EGD       +PG S  ++  + +Q +R
Sbjct: 534  FPKTTLAVSLALLVLTLFPLARLGSEFMPPLDEGDLLYMPSTLPGISPREAARLLQQTDR 593

Query: 596  TLKEKFPEIERIFARTGTAEIASDPMPPNISDGYIMLKPESEWPKPRRSRAEVLAAVQEE 655
             ++   PE++ +F + G A+ A+DP P  + +  I LKP  +W +P  +  +++A + + 
Sbjct: 594  LIR-TVPEVDSVFGKAGRADSATDPAPLTMLETTIRLKPREQW-RPGMTMDKLIAELDQT 651

Query: 656  VEKLPGNNYEFSQPIQLRFNELISGVRSDVAVKIFGDDMDVLNKTAAEVSEALGKIAGAA 715
            V  LPG    +  PI+ R + L +G++S V +K+ GD++  + + AA++ + + ++ G  
Sbjct: 652  V-SLPGIANVWVPPIRNRLDMLATGIKSPVGIKVNGDNLHDIEQIAAQIEQVVKRVPGVT 710

Query: 716  EVKVEQTTGLPMLTVNIDRNKTARYGLNVGDVQEAISIAVGGREAGTLFDGDRRFDIIVR 775
                E+  G   + ++IDR + ARYG++V ++Q  ++  +GG   G   +G +R+ I VR
Sbjct: 711  SALAERLAGGRYIDIDIDRRRAARYGVSVQELQSMVATLIGGENIGETLEGRQRYPINVR 770

Query: 776  LPENLRTDLEAIKRLPVALPKGAGAEGARTSFIPLGEVATLDIAPGPNQVSREDGKRRIV 835
             P  +R  ++A+K LPV    GA         + L ++A + ++ GP  +  E+G+    
Sbjct: 771  YPREIRDSVDAVKNLPVVTQSGAR--------LTLSDLADVRVSEGPPMLKSENGRLSDW 822

Query: 836  VSANVRGRDLGSFVAEAE-EAMRNVKIPTGYWTVWGGQYENLASATQRLQVVVPVSLLLV 894
            +  ++RGRDL S V E + +  + V +P G    W GQ+E L  AT+ +++VVP +LL++
Sbjct: 823  IYVDLRGRDLKSAVEEMQRQVAQQVTLPQGISVSWSGQFEYLERATETMKLVVPFTLLII 882

Query: 895  FTLLFAMFGNLKDGLLVFTGIPFALTGGIVALWMRGIPLSISAAVGFIALSGVAVLNGLV 954
            F LL+  FG +KD LL+   +PFAL GG+  L++ G  LS++ AVGFIAL+GVA   G++
Sbjct: 883  FILLYVTFGQIKDALLIMGTLPFALIGGVWLLYLLGYNLSVAGAVGFIALAGVAAEFGVI 942

Query: 955  MISFIRNL----REGGLP-----LDAAIREGALTRLRPVLMTALVASLGFVPMAIATGTG 1005
            M+ ++ +     R+ G P     L AAIREGA+ R+RP +MT      G +P+    GTG
Sbjct: 943  MLLYLNHAVEKHRQPGQPLTDEQLTAAIREGAVLRVRPKMMTVATIMAGLLPIMWGGGTG 1002

Query: 1006 AEVQRPLATVVIGGILSSTALTLLVLPLLYRIAHRRDEEE 1045
            +E+ + +A  ++GG++S+  L++LV+P L+ + HR   E+
Sbjct: 1003 SEIMQRIAAPMVGGMVSAPLLSMLVIPALFLLLHRNKVEK 1042



 Score = 58.5 bits (140), Expect = 2e-12
 Identities = 79/355 (22%), Positives = 162/355 (45%), Gaps = 21/355 (5%)

Query: 171  IKPQLRNVAGVTEINS---IGGYAKEFQISPDPAKLLAHGLTMTDL--VTALERNNANVG 225
            I+  ++ V GVT   +    GG  +   I  D  +   +G+++ +L  + A      N+G
Sbjct: 699  IEQVVKRVPGVTSALAERLAGG--RYIDIDIDRRRAARYGVSVQELQSMVATLIGGENIG 756

Query: 226  AGYIEKRGEQYLIRAPGQVK-SVEDIGNVILGNANGIPLRVQDVAEVGIGKELRTGAATD 284
                 ++     +R P +++ SV+ + N+ +   +G  L + D+A+V +  E      ++
Sbjct: 757  ETLEGRQRYPINVRYPREIRDSVDAVKNLPVVTQSGARLTLSDLADVRVS-EGPPMLKSE 815

Query: 285  NGREVVLGTVFMLIGENSRTVSQAVDRKMQEINR--TLPAGVKAVTVYDRTVLVDKAIAT 342
            NGR     + ++ +    R +  AV+   +++ +  TLP G+ +V+   +   +++A  T
Sbjct: 816  NGRL----SDWIYVDLRGRDLKSAVEEMQRQVAQQVTLPQGI-SVSWSGQFEYLERATET 870

Query: 343  VKKNLFEGAVLVIAILFLFLGNIRAALITALVIPLSMLFTFTGMVNQKVSANLMSLGALD 402
            +K  +    +++  +L++  G I+ AL+    +P +++      +   +  NL   GA+ 
Sbjct: 871  MKLVVPFTLLIIFILLYVTFGQIKDALLIMGTLPFALIGGV--WLLYLLGYNLSVAGAVG 928

Query: 403  FGIIIDGAVVIVENCVRRLAHA-QAHK--GRPLTRSERFHEVFAASQEARRPLLFGQLII 459
            F  +   A       +  L HA + H+  G+PLT  +    +   +    RP +     I
Sbjct: 929  FIALAGVAAEFGVIMLLYLNHAVEKHRQPGQPLTDEQLTAAIREGAVLRVRPKMMTVATI 988

Query: 460  MIVYLPIFALTGVEGKLFHPMAFTVVIALLGAMILSITFIPAAVALFIGNKVSEK 514
            M   LPI    G   ++   +A  +V  ++ A +LS+  IPA   L   NKV ++
Sbjct: 989  MAGLLPIMWGGGTGSEIMQRIAAPMVGGMVSAPLLSMLVIPALFLLLHRNKVEKQ 1043