Pairwise Alignments

Query, 170 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  140 bits (354), Expect = 9e-39
 Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%)

Query: 10  IDALYREHRDWLQGWLRRRLGDGHTAADLTQDTFVRVISGGQAQAIQEPRAYLTTLAQRV 69
           + A+Y EH  WL GWLR++LG    AADL  D F+RV+   + Q I+EPRA+L T A R+
Sbjct: 17  LTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPRAFLATTAGRL 76

Query: 70  LYNFWRRRELERAWLDALAAQPQELA-PSPETYALVREAVETIDRWLDGLPPKVREAFLL 128
           L +  RRR +E+A+++AL  Q ++   P P    +  +A+E I   L GLP K REAFLL
Sbjct: 77  LIDGARRRRIEKAYMEALVIQCEDAGMPDPAAIHVALQALERIAEMLAGLPAKAREAFLL 136

Query: 129 RRLEGLAHADIAVRMGISITSVERYVKQAIVHLY 162
            RL+GL +++IA R+ +S ++V+ Y+  A+VH Y
Sbjct: 137 SRLDGLTYSEIATRLDVSASTVKNYISSALVHCY 170