Pairwise Alignments

Query, 332 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 331 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  159 bits (402), Expect = 9e-44
 Identities = 102/308 (33%), Positives = 157/308 (50%), Gaps = 11/308 (3%)

Query: 13  VTEQAIDWLVRLDSGHSSDSDQQAFAQWLDAAPAHAAAWTNLQQRLNQRITPALSQLQAG 72
           V + AI W + LDSG  S  +++ F +WL +   HA AW  L   L+QR + A       
Sbjct: 13  VLDAAIAWQLSLDSGDGSAIEREEFDKWLASDEEHARAWRQLGM-LDQRFSVA------- 64

Query: 73  GHATPSMRALSAPGDHRPRRRALLGSAAVALLAATGGGIWL-DRRSPLMAWSSDLRTGTG 131
             + P+  AL    +   +R   LGS   ++    G  ++  +R  P+  W +D RT TG
Sbjct: 65  --SGPARAALLQSREGIRQRVRKLGSGLASVALVIGLALFAGERYVPIHYWLADQRTATG 122

Query: 132 ERRRFALEDGSDLLLNARSSADLYFSSTQRLVRLRAGALIAQVAADALRPFVVQTAQGTV 191
           E+R   L DG+ + LN  S+ D+ F   +RLV L+ G ++ +   +  RPF VQT  G++
Sbjct: 123 EQRTLKLSDGTLINLNTHSAIDVRFDEKRRLVVLQEGEILVETGHNDERPFYVQTRDGSL 182

Query: 192 RALGTRFMVQQEEGRTLVSVLEHSVRLAPRDEGPGVALEQGGSAWMRQDSVEAIFATRVD 251
           RALGTRF+V++E+  T +SVL+ +V   P         ++G    MR D +  + A    
Sbjct: 183 RALGTRFIVKREDDATRLSVLQSAVAAQPEALHQEQVFKEGQQVLMRSDGLGPLLAVTPA 242

Query: 252 PSAWSSGVLEVHDQPLSEVVDALRPYTPAVLRVSAEAARVRVFGVYPLDRPMQVLQDLVD 311
             AW+ G+L V +  L EVV+ L  Y    L V    A +R+ G +PL      L  L+ 
Sbjct: 243 TDAWTRGMLVVDNARLGEVVEELSRYRTGYLGVDKNVADLRITGSFPLHDTTLALNALLP 302

Query: 312 TLPLRVRR 319
           TLP+ + +
Sbjct: 303 TLPVHIEQ 310