Pairwise Alignments

Query, 850 a.a., TonB-dependent siderophore receptor from Variovorax sp. SCN45

Subject, 833 a.a., ligand-gated channel from Pseudomonas simiae WCS417

 Score =  220 bits (561), Expect = 2e-61
 Identities = 220/861 (25%), Positives = 370/861 (42%), Gaps = 81/861 (9%)

Query: 33  LACGSTASFAQTPSAAPGATAATDGAM---EWNLPADELGLVLARIARQGGRTISAAPSL 89
           LA     +FA  P     +T A + +     +++PA +L   L  +A Q G  ++   SL
Sbjct: 11  LALSVAMAFAAVPLLTVQSTHAEESSSAVGRFSIPAGDLSQALNSLAEQAGLVLAFDASL 70

Query: 90  VAGRRAQAVQGRFTVAQAAQQALTGSGLALAQTPSGTLTVVASSGNASASATPEAAGTTL 149
             G+R+Q + G++    A  Q L+GSGL   +  +    + +   N  A    E   TT+
Sbjct: 71  TRGKRSQGLSGQYDTDVALTQLLSGSGLQALKLSADRYRLESIPDNGGAM---ELQATTI 127

Query: 150 AEVRVTAQAER-TGTTEGTGAYTARGPSTSATGLGLSLKETPQSISVITQQRMEDENLTS 208
           +      QAE  TG   G   Y A   S S T    +L ETPQSIS++T+ +M  +N  S
Sbjct: 128 SGAY---QAESPTGPVSG---YVATR-SLSGTKTDTALIETPQSISIVTKDQMRAQNAES 180

Query: 209 IKQVLARTPGLSTSTLGTERT---SASARGYPITNYQLDGISTHSEFLGLDALPSQSIAD 265
           + Q+L  +  +   T G   +     + RG+    Y LDG+   S     DALP +   D
Sbjct: 181 LNQILRYSAAVIPETRGATASRLDQLTIRGFSPATY-LDGLRMPSS---RDALPQKDAFD 236

Query: 266 MALYDRIEVLRGASGLTTGAGDPSGIINMVRKKPTASFQGLAEASVGSWGNRRGMLDIST 325
           +   +R+EVLRG + +  G G PSG+INMV K+P  +         G++  +R   D+S 
Sbjct: 237 L---ERVEVLRGPASVLYGQGTPSGVINMVSKRPLDTPFHEVGVEYGTFNKKRTTFDLSG 293

Query: 326 PLNESGSVRGRMVAVHEEGNSYIDYYRKKKDVFYGVVE---ADLTSTLKLTAGIDHQENR 382
           P+++ G    R+  + ++ +  +++   ++            D TS   L       +  
Sbjct: 294 PMDDQGVYSYRVAGLFDDADGQVEHTETRRQSLSSAFTWRPDDATSLTLLGHFQKDPKGA 353

Query: 383 SRGSLSYLGYPLFNSSGEQVDLPVSFSGASRDNRFNTNSTSGFLTLEQTLANDWKLKLSA 442
           S GS+   G  L + +G  +D+   + G     + +    S     E    + W ++ +A
Sbjct: 354 SYGSVPAWGSVLHSPTGRSIDVDF-YDGEKNFEKSDREYYSIGWAFEHHFDDVWTVRQNA 412

Query: 443 NYLQSKQREDSVYLAVNSSLFDKFTGDGLNLNAERRDYDLRNKTVDLKLTGPFTLFGRQH 502
            YL+S+ +  S+Y   N  + D  T   +  +    D DL   T+D ++   F     QH
Sbjct: 413 RYLRSEGQYRSLYS--NYLMADYRT---IRRSTIASDVDLDAYTLDNQVQAKFDTGPLQH 467

Query: 503 EAVIGADYTDFRSLTNGSFDISGLRNAPVNIYRWNNAGTPVFGERF----VTFDSTRR-- 556
             ++G DY   ++ +  +   SG+  A   +  +N    PV+G        T D T R  
Sbjct: 468 TLLMGLDY---QNTSTDTLSGSGVYTAGPTLDIFN----PVYGAAVPVPAYTTDGTSRSE 520

Query: 557 QKSIYGAGRFQLSDQFKLVVGGKLLNYDSDYITKTTDGYDSKSPSSERRVFTPYAGLLYD 616
           Q  +Y   + +  D++ L++GG+     +D  T+T         S + + FT   GL+Y 
Sbjct: 521 QTGVYLQEQMKW-DKWVLLLGGRYDWASTDNSTQTLSSGAKSKSSLDSKAFTGRIGLVYL 579

Query: 617 LDENHTLYTSFATIYNPQSSIDRYGALLDPQKGDTYEAGIKSSFLGGRVTSSAAVYQIKQ 676
            D     Y S+A  +NPQS     G++  P +G  YE GIK    G     +AA++ ++Q
Sbjct: 580 FDNGLAPYASYAESFNPQSGTGYGGSVFKPTEGKQYEIGIKYQPPGSNSFITAAIFDLRQ 639

Query: 677 DNIAEADSGYFVPGTTNTASRAIKGATTRGIDLELNGTLARGWNVAASYNFSTSK----- 731
            N+   D        T           +RG +LE   +L    ++ A+Y +  ++     
Sbjct: 640 TNVLTTDPDPTHLCGTGRCQSQDGEVQSRGFELEGKASLNDNLDITAAYAYLDNRISKSN 699

Query: 732 --------------DATGQRINTTF--PRQMARLWTTYRLPGDWRRLTLGGGVDWSSGFY 775
                          A      TT+  PR  A  W  Y +  D +    G G    +G  
Sbjct: 700 NTVRYAPISDIGVGPAIAAEGTTTYGVPRHTASAWADYTV-HDGKLKGFGVG----AGAR 754

Query: 776 YTGEAWQIERTVTARQGAYAVASLMARYDV------NDQLSVTLNVQNLFDRKYISSVSG 829
           Y G +W  +   T +   Y +      YD+       D L + LN  NL +++Y++S   
Sbjct: 755 YVGSSWG-DTANTLKVPGYTLFDAAVHYDIPNIARLKDNLRLALNATNLANKEYVASCYS 813

Query: 830 WWYSGTYGAPRNVQLTARYKF 850
           + +   YG+ R VQ +A Y++
Sbjct: 814 YSWC-WYGSQRTVQASATYQW 833