Pairwise Alignments

Query, 510 a.a., Inner-membrane proton/drug antiporter (MSF type) of tripartite multidrug efflux system from Variovorax sp. SCN45

Subject, 511 a.a., multidrug efflux transport system - permease subunit from Pseudomonas putida KT2440

 Score =  274 bits (700), Expect = 6e-78
 Identities = 161/500 (32%), Positives = 260/500 (52%), Gaps = 7/500 (1%)

Query: 14  MITISIMLATIMQALDTTIANVALPHMQGSLQASQDQITWVLTSYIVASAIALPLTGWLC 73
           + TI + LAT MQ LDTTIANVALP + G+L  S +Q TWV+TS+ V++AIALPLTGWL 
Sbjct: 16  LTTIGLSLATFMQVLDTTIANVALPTISGNLGVSYEQGTWVITSFAVSNAIALPLTGWLS 75

Query: 74  GHWGRRRVFIISVIGFTVASALCGLATSLVGIVAARLLQGIFGAALVPLSQAVLLDINPR 133
             +G  ++FI + + F +AS LCG+A S+  +V  R+LQG+    L P++Q +L+ + P 
Sbjct: 76  RRFGEVKLFIWATLLFVLASFLCGIAQSMPELVGFRVLQGVVAGPLYPMTQTLLIAVYPP 135

Query: 134 EKVGQAMAIWGAGIMVGPILGPLLGGWLTENFDWRWVFFINLPVGIFAFWGIARYLPESR 193
            K G A+A+     +V PI GP+LGGW+T+++ W W+FFIN+P+G+FA   + R    +R
Sbjct: 136 AKRGMALALLAMVTVVAPIAGPILGGWITDSYSWPWIFFINVPIGLFAA-AVVRQQMRTR 194

Query: 194 P---QGEKLDIFGFVTLSLAIGMLQLFLDRGEQLDWFDSWEIKLEAAAALVAFGFFVVHT 250
           P     + +D  G +TL + +G LQ+ LD+G  LDWF+S  I + +  ++V    FV+  
Sbjct: 195 PVVTSRQPMDYIGLLTLIIGVGALQVVLDKGNDLDWFESSFIIVGSLISVVFLAVFVIWE 254

Query: 251 WTVQGVSFFDRDLLKDRNFVTGLLFAFIVGMILFATMALLPNFLQGLMGYPVVYTGQVTA 310
            T +     +  L   RNF  G +         F    +LP +LQ  MGY   + G   A
Sbjct: 255 LTDRH-PVVNLRLFVHRNFRIGTIVLVGGYAGFFGINLILPQWLQTQMGYTATWAGLAVA 313

Query: 311 PRGVGTMIAMIIVGRLVQKVDVRAIMAVGFGLTAFSLYQMTRLTLQMDSTLIIVSGFIQG 370
           P G+  +I    VG+   + D+R +  + F     S Y     T ++D   + +     G
Sbjct: 314 PIGLLPVIMSPFVGKYAHRFDLRVLAGLAFLAIGTSCYMRAGFTSEVDFQHVALVQLFMG 373

Query: 371 LGIGFTFVPLSTATFATLAPRLRNQGTPIFSLLRNIGSSVGISIVQALLTEGSSKAHAQI 430
           +G+   F+P  +   + L P     G+ + + LR +G S   S+   +    + + HA +
Sbjct: 374 IGVALFFMPTLSILLSDLPPHQIADGSGLATFLRTLGGSFAASLTTWIWIRRADQHHAYL 433

Query: 431 AATVAPGNQALSTLPQMMSPDTMTGLALLNAEVTRQGALVGYLDDFAIMMIITVLAIPLL 490
           +  ++  +       + +   +    A L   +  Q  ++  +D F +M  +    I L+
Sbjct: 434 SEHISQFDPTTRHTLEQLGGASPQSYAQLEQILNGQAYMMSTVDYFTLMSWVFAGLILLV 493

Query: 491 LLIRSPKRSAAASGPAEVPH 510
              + P    A +GPA   H
Sbjct: 494 WFAKPP--FTAKAGPASAGH 511