Pairwise Alignments

Query, 598 a.a., Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.3.8.8) from Variovorax sp. SCN45

Subject, 600 a.a., Acyl-CoA dehydrogenase family protein from Pseudomonas putida KT2440

 Score =  373 bits (957), Expect = e-107
 Identities = 227/570 (39%), Positives = 325/570 (57%), Gaps = 18/570 (3%)

Query: 9   RDMQFVLHEVLNVTEELKALPAHAETDADTINAVIEEAGKFAAEVTFPLNISGDE-EGCT 67
           R++ F L+EVL+  E L   P  AE   +T +A +  A   A +   P N   DE E   
Sbjct: 9   RNLAFELYEVLDA-EALTLRPRFAEHSRETFDAALTTARTIAEKYFAPHNRKADENEPRY 67

Query: 68  LDKATHEVKTPKGFKDAYAKYVEGGWPALSCDPAFGGQGLPFVVNQCLFEMLNSANQAWT 127
           +D     +   K   DA+   +E G+   + D   GG  LP +V+Q       +AN   T
Sbjct: 68  VDGRAELIPEVKPAVDAF---LEAGFLNANRDFEVGGMQLPSLVSQACIAHFQAANAGTT 124

Query: 128 MYPGLSHGAYEALAAHGTEEQKKTYLPKLTSGEWTGTMCLTEPHCGTDLGLLRTKAEPQA 187
            YP L+ GA   + + G++EQK+ +L  +  G + GTM LTEPH G+ L  +RT+AEP  
Sbjct: 125 AYPFLTMGAANLIESFGSDEQKRLFLQPMIDGRYFGTMALTEPHAGSSLADIRTRAEPAG 184

Query: 188 DGTYRITGSKIFISAGEHDMTDNIIHLVLARLPDAPKGSKGISLFVVPKFKVKADGSLGE 247
           DG+YR+ G+KIFIS G+H++++NI+H+VLA+LPDAP G KGISLF+VPK+ V  +GS G 
Sbjct: 185 DGSYRLKGNKIFISGGDHELSENIVHMVLAKLPDAPPGVKGISLFIVPKYHVNPNGSRGP 244

Query: 248 RNPIFCAGLEHKMGIHGNATAQIVIEG---ATGTLVGEPNKGLAAMFVMMNAARLGVGNQ 304
           RN +  AGL HKMG  G  +  +         G LVG+P++GLA MF MMN AR+GVG  
Sbjct: 245 RNDVLLAGLFHKMGWRGTTSTALNFGDNGQCVGYLVGQPHQGLACMFQMMNEARIGVGMG 304

Query: 305 SLGLTEVAYQNALAYAKDRIQMRSLSGVKAKDKEADPIIVHPDVRKMLLTAKAYAEGGRA 364
           ++ L    Y  +L YA+ R Q R L   K     A PII H DV++MLL  KAY EG   
Sbjct: 305 AVMLGYAGYLYSLEYARQRPQGR-LPDNKDPHSPAVPIIEHTDVKRMLLAQKAYVEGAFD 363

Query: 365 LQIFCTLLLDKEHNHPDEKVRKDSGELVALLTPIVKAFITDNGHISTNACMQVFGGHGFI 424
           L ++   L D  H  PDE  RK + +L+ LLTPIVK++ +     +    +Q+ GGHG+ 
Sbjct: 364 LGLYAARLFDDTHTAPDENARKPAQDLLDLLTPIVKSWPSAFCLKANELAIQILGGHGYT 423

Query: 425 KEWGMEQFVRDNRINMIYEGTNTIQSLDLLGRKVLGNNGASLKKFGKLVGKLVEEEGVNE 484
           +E+ +EQ+ RDNR+N I+EGT  IQSLDLLGRK+  +NGA LK+  +L+    E    + 
Sbjct: 424 REYPVEQYYRDNRLNPIHEGTEGIQSLDLLGRKLAQHNGAGLKQLIRLIAATCERASHHP 483

Query: 485 KMAEFINPIAGLGDQLTKFTTEIGFKGFQNPDEVGAAAVD---YLRVAGHFVFGYLF--- 538
            +     P+  L ++L   T  +   G     +V  A  +   YL+  GH V G+ +   
Sbjct: 484 NLDPLRQPLEQLANRLQGVT--LALLGDLAQGKVAGALANSALYLKAFGHCVIGWRWLEQ 541

Query: 539 ARMAQVALREIAAGNNDPFYVAKLQTARFY 568
           A  A++ + +  A + D FY+ KLQ AR++
Sbjct: 542 AVHAELGMLKGTAADRD-FYLGKLQAARYF 570